View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_54 (Length: 259)
Name: NF11768_low_54
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 25074569 - 25074801
Alignment:
| Q |
11 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25074569 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctccaccctttcatattatactagctgtgatatgaatacaacatct |
25074668 |
T |
|
| Q |
111 |
cctcattagtattattatggagaaggttaaattataattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25074669 |
cctcattagtattattatggagaaggttaaattataattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataa |
25074768 |
T |
|
| Q |
211 |
ttttatgggtttttcaaatttaggcataacatg |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25074769 |
ttttatgggtttttcaaatttaggcataacatg |
25074801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 25132538 - 25132770
Alignment:
| Q |
11 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatct |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25132538 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctccaccctttcatattatactagctgtgatatgaatacaacatct |
25132637 |
T |
|
| Q |
111 |
cctcattagtattattatggagaaggttaaattataattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataa |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25132638 |
cctcattagtattattatggagaaggttaaattataattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataa |
25132737 |
T |
|
| Q |
211 |
ttttatgggtttttcaaatttaggcataacatg |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
25132738 |
ttttatgggtttttcaaatttaggcataacatg |
25132770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 2039112 - 2038880
Alignment:
| Q |
11 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatct |
110 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2039112 |
tgagatatacgatgttttcttcttcattaccgagctgactgtaatatgatctttctctaccctttcatattatactagctgtgatatgaatacaacatct |
2039013 |
T |
|
| Q |
111 |
cctcattagtattattatggagaaggttaaattataattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataa |
210 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2039012 |
cctcattagtattattatggagaaggttaaattctaattacagattgaactatttatttaagtgggaatataatttcataactctacttcctacgcataa |
2038913 |
T |
|
| Q |
211 |
ttttatgggtttttcaaatttaggcataacatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
2038912 |
ttttatgggtttttcaaatttaggcataacatg |
2038880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 46994274 - 46994157
Alignment:
| Q |
11 |
tgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctctaccctttcatattatactagctatgatatgaatacaacatct |
110 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||| | |||||||| |||| ||||| |
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| T |
46994274 |
tgagatatacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctaccctttcatactctactagttgtgatatgagtacaccatct |
46994175 |
T |
|
| Q |
111 |
cctcattagtattattat |
128 |
Q |
| |
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| |||| |||||||||| |
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| T |
46994174 |
ctccatttgtattattat |
46994157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 46993865 - 46993769
Alignment:
| Q |
145 |
taattacagattgaactatttatttaagtgggaatataatttcataactctactacctacgcataattttatgggtttttcaaatttaggcataacatg |
243 |
Q |
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|||||||| ||| |||||||||||| |||||||||||||||||||||| ||| ||| || ||||||||||| |||||||||||||||||||||| |
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| T |
46993865 |
taattaca-attaaactatttatttgagtgggaatataatttcataacgtcgcta-ctatagattattttatgggtgtttcaaatttaggcataacatg |
46993769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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