View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_low_56 (Length: 254)
Name: NF11768_low_56
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_56 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0060 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 16287615 - 16287857
Alignment:
| Q |
13 |
gagaagaacaacaagatattccaatagacagtttctacaccttttcttttgttagaaaaaattaagttaaattcnnnnnnnnn-ggttgaaagccaagca |
111 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
16287615 |
gagaggaacaataggatattccaataaacagtttctacaccttttcttttgttagaaaaaattaagttaaattcttttttttatggttgaaagccaatca |
16287714 |
T |
|
| Q |
112 |
ggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgctctttttg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16287715 |
ggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattatgtctgtaattttctgttttttggttgatgctctttttg |
16287814 |
T |
|
| Q |
212 |
agtatcaccgagactctgtaaatattgtcggtgttactccttt |
254 |
Q |
| |
|
| ||||| ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
16287815 |
aatatcattgagactctgtaaatattattggtgttcctccttt |
16287857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 62247 - 62112
Alignment:
| Q |
118 |
ttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgctctttttgagtatc |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
62247 |
ttttatttatagctaccaagactggtggaaaaatctctttctttgtatgg-attacgtctgtaattttatgttttttggtcgatgctcttcttgagtatc |
62149 |
T |
|
| Q |
218 |
accgagactctgtaaatattgtcggtgttactccttt |
254 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| |
|
|
| T |
62148 |
tttgagactctgtaaatattgttggtgttcctccttt |
62112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 42333045 - 42332808
Alignment:
| Q |
18 |
gaacaacaagatattccaatagacagtttctacaccttttcttttgttagaaaaaattaagttaaattcnnnnnnnnnggttgaaagccaagcaggcgtc |
117 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| |||| || ||||||||||||| | ||||||||||| || ||||||| ||||| | || |
|
|
| T |
42333045 |
gaacaacatgatattccaacagacagttactaccccttctcatttgttagaaaaagtaaagttaaattcttttttat-ggctgaaagcaaagcatgagtg |
42332947 |
T |
|
| Q |
118 |
ttttatttata-gctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgt-tttttggttgatgctctttttgagta |
215 |
Q |
| |
|
|||| |||| | | |||||||| ||||||||| || |||||||||||||| |||||| | || |||||| | | |||||||||| | ||||||||||||| |
|
|
| T |
42332946 |
ttttgtttaaaagttaccacgattggtggaaacatccctttctttgtatgagattacctctgcaattttttttatttttggttggtcctctttttgagta |
42332847 |
T |
|
| Q |
216 |
tcaccgagactctgtaaatattgtcggtgttactccttt |
254 |
Q |
| |
|
||| || |||| ||||||||||||||||||| ||||||| |
|
|
| T |
42332846 |
tcatcgtgactatgtaaatattgtcggtgttcctccttt |
42332808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 33334991 - 33334852
Alignment:
| Q |
107 |
aagcaggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgctct |
206 |
Q |
| |
|
||||||||| |||| |||||| || ||||| ||||||||| || || ||||||||||| || | || ||||||||| || ||||||||| |||||| |
|
|
| T |
33334991 |
aagcaggcgaattttgattatagttatcacgattggtggaaacatcccattctttgtatgagagtgtgtatgtaattttttgagttttggttggtgctct |
33334892 |
T |
|
| Q |
207 |
ttttgagtatcaccgagactctgtaaatattgtcggtgtt |
246 |
Q |
| |
|
||||| ||| ||| | ||||||||||||||| |||||||| |
|
|
| T |
33334891 |
ttttgtgtagcactgtgactctgtaaatattttcggtgtt |
33334852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University