View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_59 (Length: 250)
Name: NF11768_low_59
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47568176 - 47568418
Alignment:
| Q |
1 |
tcattcatttaccttcccttgaagatcctttgaagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattcttta |
100 |
Q |
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| T |
47568176 |
tcattcgtttaccttcccttgaagatcctttgaagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattcttta |
47568275 |
T |
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| Q |
101 |
tctccatgaggattcacgccttaaaattaacacagtgatctaaaacatagtaatgttttgttagatggtaacaaggaaccaaaaatctttgaattccttt |
200 |
Q |
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| T |
47568276 |
tctccatgaggattcacgccttaaaattaacacagtgatctaaaacatagtaatgttttgttagatggtaacaaggaaccaaaaatctttgaattccttt |
47568375 |
T |
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| Q |
201 |
tttctccaacactcactcaccgaaaaattcaaattctctgctc |
243 |
Q |
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| T |
47568376 |
tttctccaacattcactcaccgaaaaattcaaattctccgctc |
47568418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 6525203 - 6525285
Alignment:
| Q |
33 |
aagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattctttatctccatgaggattc |
115 |
Q |
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| T |
6525203 |
aagagaacacaattaaactggaacagaaggtataaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattc |
6525285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 47584270 - 47584380
Alignment:
| Q |
77 |
aggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta-acacagtgatctaaaacatagtaatgttttgttagatggtaacaag |
175 |
Q |
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| T |
47584270 |
aggaattgcccgtggaattctttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatg |
47584369 |
T |
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| Q |
176 |
gaaccaaaaat |
186 |
Q |
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| T |
47584370 |
aacccaaaaat |
47584380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 21968392 - 21968349
Alignment:
| Q |
72 |
attggaggaattgctcgaggaattctttatctccatgaggattc |
115 |
Q |
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| T |
21968392 |
attggaggaattgctcgaggaattctttatttgcatgagcattc |
21968349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 470204 - 470148
Alignment:
| Q |
69 |
attattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaa |
125 |
Q |
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| T |
470204 |
attattggaggaattgcacgaggaattctttacttacatgagtattcaagacttaaa |
470148 |
T |
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