View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_65 (Length: 235)
Name: NF11768_low_65
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 7227223 - 7227396
Alignment:
| Q |
44 |
gcattaaacaaattaattagtttggtccttgaaagttgtattgttcgtgatgaacaaaaactttccatatcaagtgccacactcacctatttaacaatac |
143 |
Q |
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| T |
7227223 |
gcattaaacaaattaattagtttggtccttgaaagttgtattgttagtaatgaacaaaaactttccatatcaagtgccacactcacctatttaacaatac |
7227322 |
T |
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| Q |
144 |
taaatctttgggttggtttcaaatttgaattatccactccaagtctttctaattttgttgtttattgtggtgct |
217 |
Q |
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| T |
7227323 |
taaatctttgtgttggtttcaaatttgaattatccactccaagtctttctaattttgttgtttattgtggtgct |
7227396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 7222550 - 7222578
Alignment:
| Q |
20 |
gatggttgtgccaaccccttttcggcatt |
48 |
Q |
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| T |
7222550 |
gatggttgtgccaaccccttttcggcatt |
7222578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 7058436 - 7058328
Alignment:
| Q |
18 |
atgatggttgtgccaaccccttttcggcattaaacaaattaattagtttggtccttgaaagttgtattgttcgtgatgaacaaaaactttccatatcaag |
117 |
Q |
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| T |
7058436 |
atgatggtcgtgccaatcccttttcgacattaaacaagttgaatagtttgatcattaacagatgtgcagttcgtgataaacaaaacctctacatatcgag |
7058337 |
T |
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| Q |
118 |
tgccacact |
126 |
Q |
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| T |
7058336 |
tgccacact |
7058328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 7140282 - 7140236
Alignment:
| Q |
96 |
aacaaaaactttccatatcaagtgccacactcacctatttaacaata |
142 |
Q |
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||||||| |||| ||||||||||||||| |||||| ||||||||||| |
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| T |
7140282 |
aacaaaacctttgcatatcaagtgccacgctcaccaatttaacaata |
7140236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 8656197 - 8656151
Alignment:
| Q |
96 |
aacaaaaactttccatatcaagtgccacactcacctatttaacaata |
142 |
Q |
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| T |
8656197 |
aacaaaacctctgcatatcaagtgccacactcaccaatttaacaata |
8656151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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