View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_71 (Length: 212)
Name: NF11768_low_71
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 18763819 - 18763672
Alignment:
| Q |
16 |
agagtgaaatataatggaaactattgttttttggaagttgcaagaagttacccaaaactatcgaaggtattattggaaagtaaaataggtcatacgnnnn |
115 |
Q |
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| T |
18763819 |
agagtgaaatataatggaaactattgttttttggaagttgcaagaagttacccaaaactatcgaaggtattattggaaagtaaaataggtcataccaaaa |
18763720 |
T |
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| Q |
116 |
nnncctattgccttcattgctgcaaattaaaagtataaacaacacaat |
163 |
Q |
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| T |
18763719 |
aaacctattgccttcattgctgcaaattaaaagtataaacaacacaat |
18763672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 23158811 - 23158634
Alignment:
| Q |
16 |
agagtgaaatataatggaaactattgttttttggaagttgcaagaagttacccaaaactatcgaaggtattattggaaagtaaaataggtcatacgnnnn |
115 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
23158811 |
agagtgaaatataatgaaaactattgtttttcggaagttgcaagaagttacccaaaactatcaaaggtattattggaaagtaaaataggccatac-aaaa |
23158713 |
T |
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| Q |
116 |
nnncctattgccttcattgctgcaaattaaaagtataaacaacacaataaaagaatgnnnnnnntcccagatatcaata |
194 |
Q |
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| T |
23158712 |
aaacctattgccttcattgctgcaaattaaatgtataaacaacacaataacagaatgaaaaaaatcccagatatcaata |
23158634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 20015234 - 20015094
Alignment:
| Q |
18 |
agtgaaatataatggaaactattgttttttggaagttgcaagaagttacccaaaactatcgaaggtattattggaaagtaaaataggtcatacgnnnnnn |
117 |
Q |
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|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20015234 |
agtgaaatataaaggaaa-tattgttttttgaaagttgcaagaagttacccaaaactatcgaaggtattattggaaagtaaaataggccataccaaaaag |
20015136 |
T |
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| Q |
118 |
ncctattgccttcattgctgcaaattaaaagtataaacaaca |
159 |
Q |
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| T |
20015135 |
acggattgccttcattgctgcaaattaaaagtataaacaaca |
20015094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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