View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_high_20 (Length: 253)
Name: NF11769_high_20
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 24690621 - 24690376
Alignment:
| Q |
8 |
cacagaaataaaggaagagattcttgttacannnnnnnatcattttctaaatccaataatttttgcttccttttgaatcaatacatatgtactagctagc |
107 |
Q |
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| T |
24690621 |
cacagaaataaaggaagagattcttgttacatttttttatcattttctaaatccaataatttttgcttccttttgaatcaatacatatgtactagctagc |
24690522 |
T |
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| Q |
108 |
tagtggannnnnnnnngcctagctctaatgaagctaattagttaaagaatattttatggtgatatcaacatcataaatttgttgtaagggtgaacaaaat |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690521 |
tagtggaattttttttgcctagctctaatgaagctaattagttaaagaatattttatggtgatatcaacatcataaatttgttgtaagggtgaacaaaat |
24690422 |
T |
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| Q |
208 |
ccggtggaaattgacaaaagtgtagataaaaaagggaaaagggaat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690421 |
ccggtggaaattgacaaaagtgtagataaaaaagggaaaagggaat |
24690376 |
T |
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