View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11769_high_5 (Length: 468)

Name: NF11769_high_5
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11769_high_5
NF11769_high_5
[»] chr8 (6 HSPs)
chr8 (11-392)||(24689870-24690249)
chr8 (325-396)||(11459827-11459898)
chr8 (164-319)||(24689780-24689940)
chr8 (321-396)||(36336099-36336174)
chr8 (325-392)||(8523905-8523972)
chr8 (167-219)||(8523905-8523957)
[»] chr1 (7 HSPs)
chr1 (321-396)||(42486468-42486543)
chr1 (340-396)||(3510823-3510879)
chr1 (164-308)||(42486395-42486542)
chr1 (174-217)||(9887465-9887508)
chr1 (168-214)||(38000845-38000891)
chr1 (182-266)||(3510823-3510907)
chr1 (348-396)||(23603268-23603316)
[»] chr6 (5 HSPs)
chr6 (321-388)||(12120098-12120165)
chr6 (322-392)||(26221291-26221361)
chr6 (321-396)||(2584586-2584661)
chr6 (164-312)||(12120099-12120249)
chr6 (167-266)||(12647924-12648024)
[»] chr4 (8 HSPs)
chr4 (321-389)||(40339536-40339604)
chr4 (321-392)||(43770114-43770186)
chr4 (164-317)||(40339446-40339603)
chr4 (167-214)||(56055144-56055191)
chr4 (321-375)||(16338904-16338958)
chr4 (167-266)||(32894898-32894999)
chr4 (174-266)||(46702036-46702128)
chr4 (325-373)||(43955938-43955986)
[»] chr3 (7 HSPs)
chr3 (335-396)||(43985783-43985844)
chr3 (339-396)||(21808901-21808958)
chr3 (332-396)||(14337001-14337065)
chr3 (169-213)||(43985808-43985852)
chr3 (223-319)||(14336916-14337016)
chr3 (323-371)||(45557411-45557459)
chr3 (165-212)||(51709958-51710006)
[»] chr5 (7 HSPs)
chr5 (321-371)||(30511774-30511824)
chr5 (164-319)||(30511775-30511932)
chr5 (321-371)||(30552114-30552164)
chr5 (164-319)||(30552115-30552272)
chr5 (174-310)||(12075888-12076027)
chr5 (335-396)||(12075963-12076024)
chr5 (167-252)||(11856895-11856980)
[»] chr2 (3 HSPs)
chr2 (321-371)||(44247726-44247776)
chr2 (321-392)||(25297355-25297425)
chr2 (321-388)||(41838098-41838165)
[»] scaffold0530 (1 HSPs)
scaffold0530 (337-392)||(7548-7603)
[»] scaffold0584 (1 HSPs)
scaffold0584 (167-214)||(1962-2009)
[»] scaffold0446 (1 HSPs)
scaffold0446 (167-214)||(6088-6135)
[»] scaffold0079 (1 HSPs)
scaffold0079 (321-375)||(53902-53956)
[»] scaffold0258 (1 HSPs)
scaffold0258 (321-361)||(19393-19433)
[»] chr7 (1 HSPs)
chr7 (335-395)||(6765828-6765889)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 24690249 - 24689870
Alignment:
Q  11 caaaggagtgggaagtcttgattcactgttttcatgtgaagtcacttgtcaactactttcaattcatgtctctttagcatctctcattgttttcctttct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24690249 caaaggagtgggaagtcttgattcactgttttcatgtgaagtcacttgtcaactactttcaattcatgtctctttagcatctctcattgttttcctttct 24690150  T
Q  111 gtggataatatacaaattgggtcacctgtatatacatacaattgagacgggttcttttctgatattcaatatgtcttagaaatataagtaaatgactaaa 210  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  24690149 gtggataatatacaaattgggtcacctgtata--catacaattgagacggtttcttttctgatattcaatatctcttagaagcataagtaaatgactaaa 24690052  T
Q  211 aaattcagcaagagttaactgctctcggattattagttataagtcagcggtagttaccgttggagggtattttaatatttaacttgtgtttgtaggaagt 310  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||    
T  24690051 aaattcagcaagagttaactgctgtcggattattagttatgagtcagcggtaattatcgttggggggtattttagtatttaacttgtgtttataggaagt 24689952  T
Q  311 ttctgatgtcgcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||    
T  24689951 ttctgatgtcgcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccaacagtaattaactgctg 24689870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 11459898 - 11459827
Alignment:
Q  325 ttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    |||||| || |||| ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  11459898 ttctgacattcaatgtgtcttggaaacacaagtaaatgaccaaaaaacccagcggcagttaactgctgccgg 11459827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 319
Target Start/End: Complemental strand, 24689940 - 24689780
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattatt-agttataagtcagcggta 262  Q
    |||||||||||| ||||||||||| |||| | ||||||||||||||||||  || ||  | ||||||||| |||  || || | ||||||||| | ||||    
T  24689940 cttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccaacagtaattaactgctgtcgacttttttaattataagtcggtggta 24689841  T
Q  263 gtta----ccgttggagggtattttaatatttaacttgtgtttgtaggaagtttctgatgt 319  Q
    ||||    |||||||||| ||||||| ||||| |||||||||| ||| |||||| ||||||    
T  24689840 gttaactaccgttggaggatattttagtattttacttgtgtttttagaaagtttgtgatgt 24689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 36336174 - 36336099
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    |||||||||| ||||||||||||||| |||||||| ||||||| |||||| ||||||  ||||||||| |||||||    
T  36336174 gcttttctgacatccaatatgtcttgaaaacacaaataaatgattaaaaaccccagccgtagttaactactgccgg 36336099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 8523905 - 8523972
Alignment:
Q  325 ttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctg 392  Q
    |||||| || ||||||||||| |||||||||||||||||  ||||||| ||||| | |||||||||||    
T  8523905 ttctgacattcaatatgtcttagaaacacaagtaaatgatcaaaaaactcagcggtggttaactgctg 8523972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 8523905 - 8523957
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagc 219  Q
    |||||| ||||||||||||||||||| | ||||||||||  |||||| |||||    
T  8523905 ttctgacattcaatatgtcttagaaacacaagtaaatgatcaaaaaactcagc 8523957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 42486543 - 42486468
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  42486543 gcttttctgacatccaatatgtcttgaaaacacaagtaaatgattaaaaaatccagcgatagttaactgctgccgg 42486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 3510823 - 3510879
Alignment:
Q  340 tgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    ||||||||||||| ||||||||||| |||||| |||||| |||||||||||| ||||    
T  3510823 tgtcttggaaacataagtaaatgaccaaaaaatccagcggtagttaactgctaccgg 3510879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 308
Target Start/End: Complemental strand, 42486542 - 42486395
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtag 263  Q
    ||||||||| || |||||||||||  ||| | |||||||||| |||||||| |||| | |||||||||||  ||| ||  |||||||||| |||| ||||    
T  42486542 cttttctgacatccaatatgtcttgaaaacacaagtaaatgattaaaaaatccagcgatagttaactgctgccggttttctagttataagccagcagtag 42486443  T
Q  264 t----taccgttggagggtattttaatatttaacttgtgtttgtaggaa 308  Q
    |    |||||  ||| ||||||||| ||||| |||||||||| ||||||    
T  42486442 ttaactaccgcagga-ggtattttagtattttacttgtgtttttaggaa 42486395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 9887508 - 9887465
Alignment:
Q  174 attcaatatgtcttagaaatataagtaaatgactaaaaaattca 217  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  9887508 attcaatgtgtcttagaaatacaagtaaatggctaaaaaattca 9887465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 38000891 - 38000845
Alignment:
Q  168 tctgatattcaatatgtcttagaaatataagtaaatgactaaaaaat 214  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||||||||    
T  38000891 tctgacattcaatctgtcttagaaatacaagtaaatgattaaaaaat 38000845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 3510823 - 3510907
Alignment:
Q  182 tgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtagtta 266  Q
    |||||| |||| ||||||||||||| ||||||| ||||   |||||||||||  ||| || |||||||||| | |||| ||||||    
T  3510823 tgtcttggaaacataagtaaatgaccaaaaaatccagcggtagttaactgctaccggttttttagttataaataagcgatagtta 3510907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 23603268 - 23603316
Alignment:
Q  348 aaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||| ||||    
T  23603268 aaacacatgtaaaagactaaaaaacccagcggtaattaactgcttccgg 23603316  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 12120098 - 12120165
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaact 388  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  12120098 gcttttctgacatccaatatgtcttggaaacacaagcaaatgactaaaaaacctagcggtagttaact 12120165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 26221361 - 26221291
Alignment:
Q  322 cttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctg 392  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||    
T  26221361 cttttctgacatcaaatatgtcttggaaacacaagtgaatgactaaaaaacctagcggtagttaacagctg 26221291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 2584661 - 2584586
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||  || || |||||| ||||||||||    
T  2584661 gcttttctgacatccaatatatcttggaaacataagtaaatgaccaaaaaagtcaacggtagttatctgctgccgg 2584586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 12120099 - 12120249
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtag 263  Q
    ||||||||| || ||||||||||| |||| | ||| ||||||||||||||   |||   |||||||| || |||| ||  ||||||||||  ||||||||    
T  12120099 cttttctgacatccaatatgtcttggaaacacaagcaaatgactaaaaaacctagcggtagttaactcctatcggttttctagttataagctagcggtag 12120198  T
Q  264 tta----ccgttggagggtattttaatatttaacttgtgtttgtaggaagttt 312  Q
    |||    ||| |||  ||||||||||||||| |||||||||| ||||||||||    
T  12120199 ttaactaccgctgg--ggtattttaatattttacttgtgtttttaggaagttt 12120249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 12648024 - 12647924
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttat-aagtcagcggtagtt 265  Q
    |||||| ||||||||||| ||||||| | ||||||||||  ||||||||||||   | ||||||||| ||| ||| ||| |||| |||||||||||||||    
T  12648024 ttctgacattcaatatgttttagaaacacaagtaaatgatcaaaaaattcagcggtaattaactgctgtcgaatttttaattataaagtcagcggtagtt 12647925  T
Q  266 a 266  Q
    |    
T  12647924 a 12647924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 40339604 - 40339536
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactg 389  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  40339604 gcttttctaatatccaatatatcttggaaatacaagtaaatgactaaaaaactcagcggtagttaactg 40339536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 43770186 - 43770114
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgact-aaaaaacccagcgttagttaactgctg 392  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||| |||||||||| || |||||||||||||    
T  43770186 gcttttctgacatccaatatgtcttgaaaacacaagtaaataactcaaaaaacccaacggtagttaactgctg 43770114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 40339603 - 40339446
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattat-tagttataagtcagcggta 262  Q
    ||||||| |||| |||||| |||| |||||| |||||||||||||||||| |||||   ||||||||| | |||| || | |||||||||||||||  ||    
T  40339603 cttttctaatatccaatatatcttggaaatacaagtaaatgactaaaaaactcagcggtagttaactgttgtcgggttttctagttataagtcagcaata 40339504  T
Q  263 gt----taccgttggagggtattttaatatttaacttgtgtttgtaggaagtttctgat 317  Q
    ||    ||||| |||| ||||| ||| ||||| |||||||||| |||||||||| ||||    
T  40339503 gttaactaccgctgga-ggtatgttagtattttacttgtgtttttaggaagtttatgat 40339446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 56055144 - 56055191
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaat 214  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  56055144 ttctgacattcaatatgtcttagaaacataagtaaatgaccaaaaaat 56055191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 16338904 - 16338958
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaaccca 375  Q
    |||||||||| |||||||||||||| ||||||||| |||||| || |||||||||    
T  16338904 gcttttctgacatccaatatgtcttagaaacacaaataaatgtctgaaaaaccca 16338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 32894898 - 32894999
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgact-aaaaaattcagcaagagttaactgctctcggattattagttat-aagtcagcggtagt 264  Q
    |||||| ||||| |||| |||||||| | |||||||||||| |||||||||||    ||||||| ||| |||| || |||||||| ||||||||||||||    
T  32894898 ttctgacattcactatgccttagaaacacaagtaaatgactaaaaaaattcagtggcagttaacagctgtcggttttttagttataaagtcagcggtagt 32894997  T
Q  265 ta 266  Q
    ||    
T  32894998 ta 32894999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 46702128 - 46702036
Alignment:
Q  174 attcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtagtta 266  Q
    ||||||| ||||||||||| ||||||| ||||||||||||| ||||   | || |||||| ||   || | ||||||||||||||||||||||    
T  46702128 attcaatgtgtcttagaaacataagtagatgactaaaaaatccagcggcaattcactgctgtcaatttttaagttataagtcagcggtagtta 46702036  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 43955986 - 43955938
Alignment:
Q  325 ttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacc 373  Q
    |||||| || |||| |||||| |||||||||||||||||| ||||||||    
T  43955986 ttctgacattcaatgtgtcttagaaacacaagtaaatgaccaaaaaacc 43955938  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 43985844 - 43985783
Alignment:
Q  335 caatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  43985844 caatatgtcttagaaacacaagtaaatgactaaaaaacccagcggcacttaactgctgccgg 43985783  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 21808901 - 21808958
Alignment:
Q  339 atgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    ||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  21808901 atgtcttagaaacacaagtaaatgaccaaaaaacctagcgtcagttaactgctgccgg 21808958  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 14337065 - 14337001
Alignment:
Q  332 atccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    ||||||||||| ||||||||| | ||||||||| |||||||| || | |||||||||||||||||    
T  14337065 atccaatatgtattggaaacatacgtaaatgaccaaaaaaccaagtggtagttaactgctgccgg 14337001  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 43985852 - 43985808
Alignment:
Q  169 ctgatattcaatatgtcttagaaatataagtaaatgactaaaaaa 213  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||    
T  43985852 ctgacattcaatatgtcttagaaacacaagtaaatgactaaaaaa 43985808  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 14337016 - 14336916
Alignment:
Q  223 agttaactgctctcggattattagttataa-gtcagcggtagt----taccgttggagggtattttaatatttaacttgtgtttgtaggaagtttctgat 317  Q
    |||||||||||  ||| || |||||||||| ||||||||||||    ||||||||||  |||||||| ||||| | |||||||| |||||||||| ||||    
T  14337016 agttaactgctgccgggtttttagttataaagtcagcggtagttaactaccgttgga-agtattttagtattttatttgtgtttttaggaagtttatgat 14336918  T
Q  318 gt 319  Q
    ||    
T  14336917 gt 14336916  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 45557459 - 45557411
Alignment:
Q  323 ttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaa 371  Q
    |||| ||| |||||||||||||||||||||||| ||||| | |||||||    
T  45557459 ttttttgacatccaatatgtcttggaaacacaaataaataattaaaaaa 45557411  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 51709958 - 51710006
Alignment:
Q  165 ttttctgatattcaatatgtcttag-aaatataagtaaatgactaaaaa 212  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||||    
T  51709958 ttttctcacattcaatatgtcttagaaaacataagtaaatgactaaaaa 51710006  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 30511774 - 30511824
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaa 371  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  30511774 gcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaa 30511824  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 30511775 - 30511932
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtag 263  Q
    ||||||||| ||  |||||||||| |||| | |||||||||||||||||||||| | | ||||||||||| |||  ||  |||||||||| |||| ||||    
T  30511775 cttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataagccagcagtag 30511873  T
Q  264 t----taccgttggagggtattttaatatttaacttgtgtttgtaggaagtttctgatgt 319  Q
    |    ||| ||| || | ||||||||||||| |||||||||| |||||||||| ||||||    
T  30511874 ttaactactgttaga-gatattttaatattttacttgtgtttttaggaagtttatgatgt 30511932  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 30552114 - 30552164
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaa 371  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  30552114 gcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaa 30552164  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 30552115 - 30552272
Alignment:
Q  164 cttttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtag 263  Q
    ||||||||| ||  |||||||||| |||| | |||||||||||||||||||||| | | ||||||||||| |||  ||  |||||||||| |||| ||||    
T  30552115 cttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataagccagcagtag 30552213  T
Q  264 t----taccgttggagggtattttaatatttaacttgtgtttgtaggaagtttctgatgt 319  Q
    |    ||| ||| || | ||||||||||||| |||||||||| |||||||||| ||||||    
T  30552214 ttaactactgttaga-gatattttaatattttacttgtgtttttaggaagtttatgatgt 30552272  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 12076027 - 12075888
Alignment:
Q  174 attcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataagtcagcggtagt----taccg 269  Q
    ||||||| ||||||||||| | ||||||||||| ||||||   |||   |||||||||||  ||| ||  |||||||||||||||||||||    |||||    
T  12076027 attcaatgtgtcttagaaacacaagtaaatgaccaaaaaaccaagcggcagttaactgctgccggttttctagttataagtcagcggtagttaactaccg 12075928  T
Q  270 ttggagggtattttaatatttaacttgtgtttgtaggaagt 310  Q
     |||| ||||||||| ||||| |||||||||| ||||||||    
T  12075927 ctgga-ggtattttagtattttacttgtgtttttaggaagt 12075888  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 12076024 - 12075963
Alignment:
Q  335 caatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctgccgg 396  Q
    |||| |||||| |||||||||||||||||| |||||||| ||||  ||||||||||||||||    
T  12076024 caatgtgtcttagaaacacaagtaaatgaccaaaaaaccaagcggcagttaactgctgccgg 12075963  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 11856980 - 11856895
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaattcagcaagagttaactgctctcggattattagttataa 252  Q
    |||||| ||| ||||||||| ||||| |||||||||||| ||||||| |||||   |||||| |||| ||||||| ||| ||||||    
T  11856980 ttctgagatttaatatgtctgagaaacataagtaaatgattaaaaaactcagcggtagttaattgctgtcggatttttaattataa 11856895  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 44247726 - 44247776
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaa 371  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  44247726 gcttttctgacatccaatatatcttggaaacacaagtaaatgactaaaaaa 44247776  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 25297425 - 25297355
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctg 392  Q
    |||||||||| ||||||| | |||||||||||||||||||||| ||||||| ||| || |||||||||||||    
T  25297425 gcttttctgacatccaatgtatcttggaaacacaagtaaatgattaaaaaa-ccaacggtagttaactgctg 25297355  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 41838098 - 41838165
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaact 388  Q
    |||||||||| ||||||||  || |||||||||| ||||||||||||||||  ||||| |||||||||    
T  41838098 gcttttctgacatccaatagttcctggaaacacatgtaaatgactaaaaaattcagcggtagttaact 41838165  T

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Target: scaffold0530 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 7548 - 7603
Alignment:
Q  337 atatgtcttggaaacacaagtaaatgactaaaaaacccagcgttagttaactgctg 392  Q
    ||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||    
T  7548 atatgtctttgaaacacaagtaaatgaccaaaaaacccagcggcagttaactgctg 7603  T

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Target: scaffold0584 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0584
Description:

Target: scaffold0584; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 2009 - 1962
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaat 214  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  2009 ttctgacattcaatatgtcttagaaacataagtaaatgaccaaaaaat 1962  T

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Target: scaffold0446 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 6135 - 6088
Alignment:
Q  167 ttctgatattcaatatgtcttagaaatataagtaaatgactaaaaaat 214  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  6135 ttctgacattcaatatgtcttagaaacataagtaaatgaccaaaaaat 6088  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 53956 - 53902
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaatgactaaaaaaccca 375  Q
    |||||||||| |||||||||||||| ||||||||| |||||| || |||||||||    
T  53956 gcttttctgacatccaatatgtcttagaaacacaaataaatgtctgaaaaaccca 53902  T

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Target: scaffold0258 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 19433 - 19393
Alignment:
Q  321 gcttttctgatatccaatatgtcttggaaacacaagtaaat 361  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  19433 gcttttctgacatccaatatgtcttgaaaacacaagtaaat 19393  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 6765889 - 6765828
Alignment:
Q  335 caatatgtcttggaaacacaagtaaatgactaaaaaa-cccagcgttagttaactgctgccg 395  Q
    |||| |||||| |||||||||||||| ||| |||||| |||||||  |||||||||||||||    
T  6765889 caatgtgtcttagaaacacaagtaaacgacaaaaaaaacccagcggcagttaactgctgccg 6765828  T

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