View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_high_6 (Length: 450)
Name: NF11769_high_6
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_high_6 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 47917510 - 47917934
Alignment:
| Q |
6 |
tgcaatagaagaatggaaatttgattaaagttttagggctgattttggagaagcaaatcttgtttgcatctgtttattagatcttgcttgtgattgtgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917510 |
tgcaatagaagaatggaaatttgattaaagttttagagctgattttggagaagcaaatcttgtttgcatctgtttattagatcttgcttgtgattgtgaa |
47917609 |
T |
|
| Q |
106 |
gtcttgaatagaactatcaaatttaccatattatatcagcttgctttatgtactgcttttaattctaataaagttcaacaatgcaattagtcattgactt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917610 |
gtcttgaatagaactatcaaatttaccatattatatcagcttgctttatgtactgcttttaattctaataaagttcaacaatgcaattagtcattgactt |
47917709 |
T |
|
| Q |
206 |
gaaagtttaatgccacatgtgtgttctgtcttgacaattacctttctttctgttacagtttcatcatttttgttcgtctggttgcccttgtactgttcct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917710 |
gaaagtttaatgccacatgtgtgttctgtcttgacaattacctttctttctgttacagtttcatcatttttgttcgtctggttgcccttgtactgttcct |
47917809 |
T |
|
| Q |
306 |
gcgttggagggtcacacacaaaaatactgatgcagtctggttatggggaatgtctatagtttgtgaatcatggtttgctttctcttggcttcttgatcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917810 |
gcgttggagggtcacacacaaaaatactgatgcagtctggttatggggaatgtctatagtttgtgaatcatggtttgctttctcttggcttcttgatcaa |
47917909 |
T |
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| Q |
406 |
cttcccaagctatgcccggtaaatc |
430 |
Q |
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| T |
47917910 |
cttcccaagctatgcccggtaaatc |
47917934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 29919723 - 29919299
Alignment:
| Q |
9 |
aatagaagaatggaaatttgattaaagttttagggctgatt---------ttggagaagcaaatcttgtttgcatctgtttattagatcttgcttgtgat |
99 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
29919723 |
aatagaagaatggaaattggatggaagttttagggctgattcagatgattttggagaagcaa-tctggtttgcatctgtttattagatcttgcatgtgat |
29919625 |
T |
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| Q |
100 |
tgtgaagtcttgaatagaactatcaaatttaccatattatatcagcttgctttatgtactgcttttaattctaataaagttcaacaatgcaattag-tca |
198 |
Q |
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|||| |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||| |
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| T |
29919624 |
tgtgtagtcttcaataacactattaaatttaccatattatttcagcttgctttatgtactgcttgtaattctaag---gttcaacaatgcaatttggtca |
29919528 |
T |
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| Q |
199 |
ttgacttgaaagtttaatgccacatgtgtgttctgtcttgacaattacctttctttctgttacagtttcatcatttttgttcgtctggttgcccttgtac |
298 |
Q |
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| T |
29919527 |
ttgacttgaaagttgaatgccgcatgtgtgttctg-----acaattacctttctttctgttacagtctcatcatttttatccgtttggttgctcttgtgt |
29919433 |
T |
|
| Q |
299 |
tgttcctgcgttggagggtcacacacaaaaatactgatgcagtctggttatggggaatgtctatagtttgtgaatcatggtttgctttctcttggcttct |
398 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29919432 |
tgttcctgcactggagggtcacacacaaaaataccgatgcagtctggttatggggcatgtctatagtttgtgaattatggtttgctttctcttggcttct |
29919333 |
T |
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| Q |
399 |
tgatcaacttcccaagctatgcccggtaaatcgt |
432 |
Q |
| |
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| T |
29919332 |
tgatcaactgcccaagctatgcccagtaaatcgt |
29919299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 53722 - 53584
Alignment:
| Q |
292 |
cttgtactgttcctgcgttggagggtcacacacaaaaatactgatgcagtctggttatggggaatgtctatagtttgtgaatcatggtttgctttctctt |
391 |
Q |
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|||| ||||||| ||| |||||||||||||||||||||||| |||||| |||||| |||| | |||||| | ||||||||| ||||||||||||||||| |
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| T |
53722 |
cttgcactgttcttgcattggagggtcacacacaaaaataccgatgcaatctggtaatggagcatgtctgttgtttgtgaaatatggtttgctttctctt |
53623 |
T |
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| Q |
392 |
ggcttcttgatcaacttcccaagctatgcccggtaaatc |
430 |
Q |
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|||||||||||||| || |||||||||| || ||||||| |
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| T |
53622 |
ggcttcttgatcaagttaccaagctatgtccagtaaatc |
53584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 430
Target Start/End: Original strand, 53203 - 53337
Alignment:
| Q |
297 |
actgttcctgcgttggagggtcacacacaaaaatactgatgcagtctggttatggggaatgtctatagtt---tgtgaatcatggtttgctttctcttgg |
393 |
Q |
| |
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||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||| | |||||| | ||| |||||| || |||||||||||||||| |
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| T |
53203 |
actgttcttgcattggagggtcacaca--aaaataccaatgcaatctggttatgaagcatgtctgttgttgtttgtgaaatatagtttgctttctcttgg |
53300 |
T |
|
| Q |
394 |
cttcttgatcaacttcccaagctatgcccggtaaatc |
430 |
Q |
| |
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|||||||||||| || |||||||||| || ||||||| |
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| T |
53301 |
cttcttgatcaagttaccaagctatgtccagtaaatc |
53337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 15419911 - 15419842
Alignment:
| Q |
333 |
tgatgcagtctggttatggggaatgtctatagtttgtgaatcatggtttgctttctcttggcttcttgat |
402 |
Q |
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||||||| | ||||||||||| || || || ||||||||| |||||||||||||| |||||||||||| |
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| T |
15419911 |
tgatgcactgtggttatgggggatatcaattgtttgtgaaatttggtttgctttctcatggcttcttgat |
15419842 |
T |
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