View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_high_8 (Length: 391)
Name: NF11769_high_8
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 35833814 - 35834179
Alignment:
| Q |
14 |
agatgaagatgaggaatcatcatttattctaagatctcatttaagttctaaataatgattttttacaccaccttgtcagtaagaaaagctaacaaagatt |
113 |
Q |
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| T |
35833814 |
agatgaagatgaggaatcatcatttattctaagatctcatttaagttctaaataatgattttttacaccaccttgtcagtaagaaaagctaataaagatt |
35833913 |
T |
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| Q |
114 |
tataaattccaaactaaactagaatatgtatcaaacatgtcttgtattttctatcacctggttagaaaggaccctgatactaacatcaaaac------nn |
207 |
Q |
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| T |
35833914 |
tataaattccaaactaaactagaatatgtatcaaacatgtcttgtattttctatcacctggttagaaaggaccctgatactaacatcaaaacaaaaaaaa |
35834013 |
T |
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| Q |
208 |
nnnnntataagaatcttatgccataattgccacaaacggtgtagcctaataaccaactggatactgcattgatagaaaagtcagttttatggcaagctac |
307 |
Q |
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| T |
35834014 |
aaatatataagaatcttatgccataattaccacaaacggtgtagcctaataaccaactggatactgcattgatagaaaagtcagttttatggccagctac |
35834113 |
T |
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| Q |
308 |
cggcagtacgagaagatatttatttcgcattttggcgtattattaggagatgatttgagttttcca |
373 |
Q |
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| T |
35834114 |
cggcagtacgagaagatatttatttcgcattttggcgtattattaggagatgatttgagttttcca |
35834179 |
T |
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