View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_1 (Length: 804)
Name: NF11769_low_1
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 373 - 787
Target Start/End: Original strand, 40470154 - 40470568
Alignment:
| Q |
373 |
cactagtcatttgaataaaaactctaacttattgatgtggagtccacataaaatgtgtcgtatcatactctctaacaattgaacttaatggatacatctt |
472 |
Q |
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| T |
40470154 |
cactagtcatttgaataaaaactctaacttattgatgtggcgtccacataaaatgtgtcgtatcatactctctaacaattgaacttaacggataaatctt |
40470253 |
T |
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| Q |
473 |
ttgattgtcatgttataatttcagggacaaaattgctaatttctaaaagttacagatggttacaatttcaggtacaaagtttcctacatactcgatattt |
572 |
Q |
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| T |
40470254 |
ttgattgtcatgttataatttcagggacaaaattgctaatttgtaaaagttacagatggttacaatttcaggtacaaaatttcctacatactcgatattt |
40470353 |
T |
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| Q |
573 |
tgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcgttttaaaagttactttgaagaagaaaagtataaacctggga |
672 |
Q |
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| T |
40470354 |
tgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcattttaaaagttactttgaagaagaaaagtataaacctggga |
40470453 |
T |
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| Q |
673 |
tatggatttcccttcaccaccttctgcccatatttcctccagcgaaagccatctccaagtacttcagaatccacagaactttgcataacaatgtgtggct |
772 |
Q |
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| T |
40470454 |
tatggatttcccttcaccaccttctgcccatatttcctccagcgaaagccatctccaaggacttcagaatccacagaactttgcataacaatgtgtggct |
40470553 |
T |
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| Q |
773 |
ctactaaaccttcct |
787 |
Q |
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| T |
40470554 |
ctactaaaccttcct |
40470568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 40469794 - 40470088
Alignment:
| Q |
12 |
agttactacattccaaattgtcaccatctataagaggatccaaagcatttagtcataataactatactgttattgttaactaataaatgaaagtgtagtg |
111 |
Q |
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| T |
40469794 |
agttactacattccaaattgtcaccatctataagaggatccaaagcatttagtcataataactatactgttattgttaactaataaatgaaaatgtagtg |
40469893 |
T |
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| Q |
112 |
tcaatatggtttatctttacttaagagaagtcattgaatctttttcaga--------ttgttgtgttcttgagtggcatctcatggttgtgttttccttc |
203 |
Q |
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| T |
40469894 |
tcaatatggtttatctttacttaagagaagtcgttgaatctttttcagatgtcatatttgttgtgttcttgagtggcatctcatggttgtgctttccttc |
40469993 |
T |
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| Q |
204 |
atatgtagtcacaaatgattttggatcatctattgatctctccacatgcttgcgaacgttacagttgatactagtacatctatagtaacttctgc |
298 |
Q |
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| T |
40469994 |
atatgtagtcacaaatgattttggatcatctattgatctctccacatgcttgcgaacgttacagttgatactagtacatctatagtaacttctgc |
40470088 |
T |
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