View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11769_low_10 (Length: 382)

Name: NF11769_low_10
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11769_low_10
NF11769_low_10
[»] chr2 (1 HSPs)
chr2 (12-366)||(2016411-2016767)
[»] chr7 (1 HSPs)
chr7 (114-182)||(6933247-6933315)
[»] chr5 (2 HSPs)
chr5 (114-182)||(21547757-21547825)
chr5 (114-159)||(26291919-26291964)
[»] chr4 (3 HSPs)
chr4 (114-182)||(509308-509376)
chr4 (114-182)||(18088559-18088627)
chr4 (114-181)||(9071911-9071978)
[»] chr6 (1 HSPs)
chr6 (123-182)||(30234635-30234694)
[»] scaffold0002 (1 HSPs)
scaffold0002 (127-181)||(170999-171053)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 2016411 - 2016767
Alignment:
Q  12 gagacggacttatgatcataagactaattgtttctatctttctataggacgcatataggtgcccgtttgacgccccttannnnnnnatgtttaaaaatta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||       ||||||||||||||    
T  2016411 gagacggacttatgatcataagactaattgtttctatctttctataggatgcatataggtgcccatttgacgccccttatttttttatgtttaaaaatta 2016510  T
Q  112 ctattactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtcaccatttataatcattgatggta--gcac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  2016511 ctattactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtcaccatttataatcattgatgatatagcac 2016610  T
Q  210 tatatataacataatgtatggatcaatgaagtcacttttttctcatgttctccaataaaagcattatatgtcccttgagaagtatcatataaatgtctca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016611 tatatataacataatgtatggatcaatgaagtcacttttttctcatgttctccaataaaagcattatatgtcccttgagaagtatcatataaatgtctca 2016710  T
Q  310 aaatatgatccaaataagaagagaaaagaaatatatgataccttggcaaccatgaat 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016711 aaatatgatccaaataagaagagaaaagaaatatatgataccttggcaaccatgaat 2016767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 6933247 - 6933315
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6933247 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 6933315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 21547757 - 21547825
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21547757 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 21547825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 26291919 - 26291964
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacat 159  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  26291919 attactatagatacaatgtcacattcagtaaagatttatgatacat 26291964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 509308 - 509376
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  509308 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 509376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 18088627 - 18088559
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18088627 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 18088559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 9071911 - 9071978
Alignment:
Q  114 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgt 181  Q
    |||||||| |||||||||||||||| | ||||||||| ||||| ||||||| |||||| |||||||||    
T  9071911 attactatagatacaatgtcacattaaataaagatttttgatatatgtataggatgtattcaatgtgt 9071978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 30234694 - 30234635
Alignment:
Q  123 gatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 182  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  30234694 gatataatgtcacattcaataaagatttatgatacatgtataggatgtactcaatgtgtc 30234635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 170999 - 171053
Alignment:
Q  127 caatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgt 181  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||    
T  170999 caatgtcacattccgtaaaaatttatgatacatgtataggatgcactcaatgtgt 171053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University