View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_12 (Length: 353)
Name: NF11769_low_12
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 8796368 - 8796694
Alignment:
| Q |
16 |
ttccaaacacaggcatgcatggatgcatatgtaaacaacaacaaatatcaagcaatcaagattatgatttaaaatctgaatagtattttctgnnnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796368 |
ttccaaacacaggcatgcatggatgcatatgtaaacaacaacaaatatcaagcaatcaagattatgatttaaaatctgaatagtattttctggagagaga |
8796467 |
T |
|
| Q |
116 |
nnnnnnnnnnnnngttattatcaccaatattatctgaagatgaagaaactgtaagatttttgaactggacttcaatcctttgaagaaaaagcatagcttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796468 |
gagagagagag--gttattatcaccaatattatctgaagatgaagaaactgtaagatttttgaactggacttcaatcctttgaagaaaaagcatagcttc |
8796565 |
T |
|
| Q |
216 |
ctttaagggtttggaaagttcttgctcatacttgataagcatctcacagtaagcttccatgaactgatctagagctggatcttcacctaaacaacctgat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796566 |
ctttaagggtttggaaagttcttgctcatacttgataagcatctcacagtaagcttccatgaactgatctagagctggatcttcacctaaacaacctgat |
8796665 |
T |
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| Q |
316 |
ccaactgcatctccacccattctctctgc |
344 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
8796666 |
ccaactgcatctccacccattctcactgc |
8796694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 37099608 - 37099715
Alignment:
| Q |
202 |
aaaagcatagcttcctttaagggtttggaaagttcttgctcatacttgataagcatctcacagtaagcttccatgaactgatctagagctggatcttcac |
301 |
Q |
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|||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||| || || |||||||||||||| | | |||||||||||| |
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| T |
37099608 |
aaaagcatggcttctttgaagggtttagtgagttcttgctcatacttgataagcatctcacaatatgcctccatgaactgatccaaacctggatcttcac |
37099707 |
T |
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| Q |
302 |
ctaaacaa |
309 |
Q |
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||| |||| |
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| T |
37099708 |
ctatacaa |
37099715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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