View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_14 (Length: 349)
Name: NF11769_low_14
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5015681 - 5016013
Alignment:
| Q |
1 |
catacatgggtggctcattttatataaacttgattctatgctctctggatgtctgaaatcacattatttacctcgtgcagatgttcttaaagcttgacta |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5015681 |
catacttgggtggctcattttatataaacttgattctatgctctctggatgtctgaaatcacattatttacctcgtgctgatgttcttaaagcttgacta |
5015780 |
T |
|
| Q |
101 |
ggatacttacctagctacacttggagaagtgcttatgaagcattgtgaggctgcaaatggagagtggataatggtacattttatacacatttgagaggct |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5015781 |
ggatacttacctagctacacttggaaaagtgcttatgaagcattgtgaggctgcaaatggagagtggataatggtacattttataaacatttgagaggct |
5015880 |
T |
|
| Q |
201 |
aatttgttg-ccnnnnnnngcggtggtcgggattcg-accccaaaccttacatattttatgcatcgtccatactaaattaattgataaatgatattttac |
298 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5015881 |
aatttgttgtcttttttttgcggtggtcggaattcgaaccccaaatcttacctattttatgcatcgtccatactaaattaattgataaatgatattttac |
5015980 |
T |
|
| Q |
299 |
tgcttatgtggataatgatattttactcacaag |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
5015981 |
tgcttatgtggataatgatattttactcacaag |
5016013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 3156603 - 3156552
Alignment:
| Q |
221 |
ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
271 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
3156603 |
ggtggtcgggattcgaaccccaaatcttacatattttatgcattatccatac |
3156552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 133575 - 133605
Alignment:
| Q |
238 |
cccaaaccttacatattttatgcatcgtcca |
268 |
Q |
| |
|
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| T |
133575 |
cccaaaccttacatattttatgcatcgtcca |
133605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 49088820 - 49088779
Alignment:
| Q |
221 |
ggtggtcgggattcgaccccaaaccttacatattttatgcat |
262 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||||| |
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| T |
49088820 |
ggtggtcgggattcgaactcaaaccttacatattttatgcat |
49088779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 19126685 - 19126720
Alignment:
| Q |
236 |
accccaaaccttacatattttatgcatcgtccatac |
271 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
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|
| T |
19126685 |
accccaaaccttacatattttatgcattgtccatac |
19126720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 8261435 - 8261486
Alignment:
| Q |
221 |
ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
271 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||| ||| |||| |
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|
| T |
8261435 |
ggtggccgggattcgaaccccaaaccttacatattttatgcattgtctatac |
8261486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 14623493 - 14623527
Alignment:
| Q |
236 |
accccaaaccttacatattttatgcatcgtccata |
270 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
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|
| T |
14623493 |
accccaaaccttacatattttatgcattgtccata |
14623527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 7908660 - 7908611
Alignment:
| Q |
223 |
tggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
271 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7908660 |
tggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac |
7908611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 30397122 - 30397082
Alignment:
| Q |
236 |
accccaaaccttacatattttatgcatcgtccatactaaat |
276 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
30397122 |
accccgaaccttacatattttatgcattgtccataccaaat |
30397082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 2613790 - 2613740
Alignment:
| Q |
222 |
gtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac |
271 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
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|
| T |
2613790 |
gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac |
2613740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 40735013 - 40735051
Alignment:
| Q |
236 |
accccaaaccttacatattttatgcatcgtccatactaa |
274 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
40735013 |
accccgaaccttacatattttatgcattgtccatactaa |
40735051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 13958882 - 13958838
Alignment:
| Q |
219 |
gcggtggtcgggattcga-ccccaaaccttacatattttatgcat |
262 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
13958882 |
gcggtgttcgggattcgaaccccaaaccttacatatattatgcat |
13958838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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