View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_15 (Length: 349)
Name: NF11769_low_15
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7712560 - 7712890
Alignment:
| Q |
1 |
gacggactgccaaatggaaaatattacgagatcaggtttgatagtatgattatgtctctaatcatgaaagcacatcttaattttctatgaaattttatcg |
100 |
Q |
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| T |
7712560 |
gacggactgccaaatggaaaatattacgagatcaggtttgatagtatggttatgtctctaatcatgaaagcacatcttaattttctatgaaattttatcg |
7712659 |
T |
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| Q |
101 |
atgtttctaatctctttttcgatgcaggccacattattttcctggagctgttgtagcagctattcttggtatcatagtcaatgtgccgattatatcaatt |
200 |
Q |
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| T |
7712660 |
atgtttctaatctctttttcgatgcaggccacattattttcctggtgctgttgtagcagctattcttggcatcatagttgatgtgccgattatatcaatt |
7712759 |
T |
|
| Q |
201 |
gttgccttatgtaaagttccatacatgctttttaaaggttggaaccgtttgtttcgtgacctcattggtcgcgaaggccctttcttggagacaatatgtg |
300 |
Q |
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| T |
7712760 |
gttgccttatgtaaagttccatacatgctttttaaaggttggaaccgtttgtttcgtgacctcattggtcgcgaaggccctttcttggagacaatatgcg |
7712859 |
T |
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| Q |
301 |
tgccttttgcaggccttgctatccttctatg |
331 |
Q |
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| T |
7712860 |
tgccttttgcaggccttgctatccttctatg |
7712890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 11212253 - 11212117
Alignment:
| Q |
192 |
atatcaattgttgccttatgtaaagttccatacatgctttttaaaggttggaaccgtttgtttcgtgacctcattggtcgcgaaggccctttcttggaga |
291 |
Q |
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| T |
11212253 |
atatcaactgttgctttatttaaatgcccttacatgcttttcaaagggtggcaccgattgtttcatgacctcattggtcgtgaaggacctttcttggaga |
11212154 |
T |
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| Q |
292 |
caatatgtgtgccttttgcaggccttgctatccttct |
328 |
Q |
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| T |
11212153 |
ctatatgtgtaccttttgcaggtcttgctatccttct |
11212117 |
T |
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