View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_17 (Length: 285)
Name: NF11769_low_17
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 43586778 - 43587036
Alignment:
| Q |
19 |
accaaatcacacagcagaagctaggaagcaacattacacttctaaagcccggaagnnnnnnnn--gacacgtcacgtgataaagtaaagccagccaccaa |
116 |
Q |
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| T |
43586778 |
accaaatcacacagcagaaactaggaagcgacaccacacttctaaagcccggaagaaaaaaaaaagacacgtcacgtgataaagtaaagccaaccaccaa |
43586877 |
T |
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| Q |
117 |
ggacctcaacaaccgagatataacaaccagcagaactcaatacagattagccctgcttctactccaaaatttagaagattatctaaccaaacatccaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43586878 |
ggacctcaacaaccgagatataacaaccagcagaactcaatacagattagccctgcttctactccaaaatttagaagattatctaaccaaacatccaaaa |
43586977 |
T |
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| Q |
217 |
ggatcccaggacgattcatagaaaggacaaggcaaggataacaagccaccctccctatg |
275 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43586978 |
ggatcccaggacgattcattgaaaggacaaggcaaggataacaagccaccctccctatg |
43587036 |
T |
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