View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_19 (Length: 261)
Name: NF11769_low_19
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 34416687 - 34416432
Alignment:
| Q |
1 |
tctgatcttctagatgttatgcatttgggtaattctaagcatcattactgatacagacatcttgatttcttgtgacacaggaattgtgaggggcattgac |
100 |
Q |
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| T |
34416687 |
tctgatcttctagatgttatgcatttgggtaattctaagcatcattactgatacagacatcttgatttcttgtgacacaggaattgtgaggggcattgac |
34416588 |
T |
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| Q |
101 |
acagtcaaaggcatgctctatgtgattacacctgtgccatttgtttctctgaaaaaagtcaacctcttgctacagggtgatatccaatttcctactgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416587 |
acagtcaaaggcatgctctatgtgattacacctgtgccatttgtttctctgaaaaaagtcaacctcttgctacagggtgatatccaatttcctactgatt |
34416488 |
T |
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| Q |
201 |
tattgcaggtaagaaattgnnnnnnnngtatctgttccttcttctcaacattaact |
256 |
Q |
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| T |
34416487 |
tattgcaggtaagaaattgttttttttgtatctgttccttcttctcaacattaact |
34416432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 34425259 - 34425041
Alignment:
| Q |
1 |
tctgatcttctagatgttatgcatttgggtaattctaagcatcattactgatacagacatcttgatttcttgtgacacaggaattgtgaggggcattgac |
100 |
Q |
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|||||| |||||| ||| ||||||||| |||||||||||||||||||||| || | ||||||||| |||||||| |||| ||||||||||||||||| |
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| T |
34425259 |
tctgattttctagttgtcatgcatttgagtaattctaagcatcattactgttaaaagcatcttgatatcttgtgattcaggccttgtgaggggcattgac |
34425160 |
T |
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| Q |
101 |
acagtcaaaggcatgctctatgtgattacacctgtgccatttgtttctctgaaaaaagtcaacctcttgctacagggtgatatccaatttcctactgatt |
200 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||| || |
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| T |
34425159 |
acagtcaaaggcatgctctatctgattacaccagtgccatttggatctctgaaaaaagtcaacctcttgcttcagggtaatatccaaattcctacaagtt |
34425060 |
T |
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| Q |
201 |
tattgcaggtaagaaattg |
219 |
Q |
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||||||||||||||||||| |
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| T |
34425059 |
tattgcaggtaagaaattg |
34425041 |
T |
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