View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11769_low_2 (Length: 757)

Name: NF11769_low_2
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11769_low_2
NF11769_low_2
[»] chr3 (14 HSPs)
chr3 (1-740)||(53285319-53286058)
chr3 (329-706)||(54139122-54139490)
chr3 (336-740)||(52808551-52808953)
chr3 (133-287)||(54139553-54139705)
chr3 (314-565)||(1923704-1923947)
chr3 (3-99)||(39759823-39759919)
chr3 (1-99)||(32574386-32574484)
chr3 (133-286)||(52808309-52808462)
chr3 (3-62)||(43823076-43823135)
chr3 (1-132)||(28161007-28161137)
chr3 (624-695)||(1923574-1923645)
chr3 (1-99)||(48663342-48663439)
chr3 (77-132)||(43822991-43823046)
chr3 (49-99)||(16899696-16899746)
[»] chr6 (4 HSPs)
chr6 (1-740)||(11843696-11844441)
chr6 (3-99)||(3288065-3288161)
chr6 (1-128)||(5320349-5320475)
chr6 (1-99)||(6807559-6807656)
[»] chr1 (19 HSPs)
chr1 (336-706)||(23651071-23651439)
chr1 (336-706)||(23736505-23736873)
chr1 (336-706)||(23619726-23620094)
chr1 (437-706)||(23706864-23707134)
chr1 (3-99)||(52539760-52539856)
chr1 (3-86)||(52004415-52004497)
chr1 (1-62)||(42871900-42871961)
chr1 (161-225)||(23736148-23736210)
chr1 (161-256)||(23619367-23619460)
chr1 (161-256)||(23650712-23650805)
chr1 (12-92)||(3170297-3170376)
chr1 (3-99)||(20993549-20993645)
chr1 (1-43)||(126187-126229)
chr1 (15-68)||(3967863-3967915)
chr1 (387-428)||(23707128-23707169)
chr1 (12-43)||(8114589-8114620)
chr1 (12-43)||(52398353-52398384)
chr1 (12-42)||(22599455-22599485)
chr1 (1-43)||(24766359-24766401)
[»] chr5 (3 HSPs)
chr5 (3-99)||(41992773-41992869)
chr5 (6-85)||(37369227-37369306)
chr5 (1-43)||(33672754-33672796)
[»] chr4 (14 HSPs)
chr4 (3-94)||(7199697-7199788)
chr4 (1-68)||(48236547-48236614)
chr4 (3-62)||(55682475-55682534)
chr4 (3-62)||(37517060-37517119)
chr4 (3-62)||(41055079-41055138)
chr4 (3-62)||(51469747-51469806)
chr4 (3-85)||(11945006-11945088)
chr4 (133-423)||(48431978-48432258)
chr4 (1-99)||(374515-374613)
chr4 (1-71)||(2469419-2469489)
chr4 (12-68)||(44420589-44420644)
chr4 (48-132)||(48197279-48197363)
chr4 (77-132)||(41055020-41055075)
chr4 (1-99)||(29947842-29947939)
[»] chr2 (8 HSPs)
chr2 (3-99)||(33457939-33458035)
chr2 (2-85)||(21473202-21473285)
chr2 (1-99)||(1659273-1659370)
chr2 (1-88)||(2948828-2948915)
chr2 (1-99)||(38433016-38433113)
chr2 (12-68)||(8149202-8149257)
chr2 (12-68)||(8153826-8153881)
chr2 (12-43)||(234545-234576)
[»] chr7 (11 HSPs)
chr7 (3-89)||(11591912-11591998)
chr7 (3-74)||(46066786-46066857)
chr7 (1-132)||(48827275-48827407)
chr7 (12-62)||(43614230-43614280)
chr7 (3-62)||(33516044-33516103)
chr7 (12-99)||(36828085-36828171)
chr7 (13-128)||(37617692-37617806)
chr7 (65-132)||(34499930-34499997)
chr7 (1-99)||(4968625-4968722)
chr7 (12-43)||(34500007-34500038)
chr7 (22-68)||(44274275-44274321)
[»] scaffold0101 (1 HSPs)
scaffold0101 (6-94)||(19155-19243)
[»] scaffold0368 (1 HSPs)
scaffold0368 (1-62)||(8627-8688)
[»] chr8 (4 HSPs)
chr8 (3-62)||(38567805-38567864)
chr8 (2-99)||(35448986-35449082)
chr8 (1-99)||(43265318-43265415)
chr8 (22-68)||(20189763-20189809)
[»] scaffold0044 (1 HSPs)
scaffold0044 (12-99)||(83803-83889)


Alignment Details
Target: chr3 (Bit Score: 736; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Complemental strand, 53286058 - 53285319
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286058 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 53285959  T
Q  101 tgccgggctgcatttccgcattgacaacagaggttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacgaattttatcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285958 tgccgggctgcatttccgcattgacaacagaggttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacgaattttatcttt 53285859  T
Q  201 taccatttcatttgaatggattcaacaataaagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaacaaatgacccaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285858 taccatttcatttgaatggattcaacaataaagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaacaaatgacccaaaa 53285759  T
Q  301 ttttcagaataaactgcatctccaggacctagagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285758 ttttcagaataaactgcatctccaggacctagagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaaga 53285659  T
Q  401 atcacttcagaaattatttaccaatttacaccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285658 atcacttcagaaattatttaccaatttacaccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaa 53285559  T
Q  501 acctcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgcc 600  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285558 acctcatcagtacagcaggaccaccactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgcc 53285459  T
Q  601 ttcaaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagtt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53285458 ttcaaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagtt 53285359  T
Q  701 acaaacttacaaacataacgaagaaattttatagatacct 740  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53285358 acaaacttacaaacataacgaagaaattttatagatacct 53285319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 329 - 706
Target Start/End: Complemental strand, 54139490 - 54139122
Alignment:
Q  329 ctagagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaattta 428  Q
    |||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54139490 ctagaggaatgcccatgaccagtccaaacattttcaaaaccttctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaattta 54139391  T
Q  429 caccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaaacctcatcagtacagcaggaccatcact 528  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| || |    
T  54139390 caccagaacaatttatggtgaaaatatggaaacgccaaaacaataaaatatgattttaaaattagtatttaaacctcatcattacagcaggaccaccatt 54139291  T
Q  529 ctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc-aaatgatagtttgacgtaaatttc 627  Q
    |||| ||||||||||||||||||||||||||||||||  || ||  ||||| ||| || ||||||| || |||||  |||||| | ||| | ||||||||    
T  54139290 ctctgtctcatctaaaataagtttcaaacatggatcttggttgaagtgtgccgtttcctgtttacgctt-ccttcttaatgatggattggcataaatttc 54139192  T
Q  628 aagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaac 706  Q
    ||||||||||||| |||||||||||||| ||||         |||||||||||||||||||||||||||||||||||||    
T  54139191 aagcatggaagacattgatgggtcctgtgatag---------acattctaatcaaacaaccagcagatgagttacaaac 54139122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 336 - 740
Target Start/End: Original strand, 52808551 - 52808953
Alignment:
Q  336 aatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaatttacaccaca 435  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||    
T  52808551 aatgcccatggctagtccaaacatcttcaaaatattctcatcattccagtatctgcaaggaaataatcacttcagaaattattatccaatttacaccaca 52808650  T
Q  436 acaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaata-----gtatttaaacctcatcagtacagcaggaccatcactct 530  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||| |  ||||| |     ||||||||||||||||| ||||||||||||| || |||    
T  52808651 acaatttatggtggaaatatggaaatgccagaacaaaaaaatatgattaaaaaaaaaaaaaggtatttaaacctcatcattacagcaggaccaccattct 52808750  T
Q  531 ctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagtttgacgtaaatttcaag 630  Q
    ||||||||||||| ||||||||||||||||||||| | |  |  |||||  ||| | ||||||| | ||||| |  |||  | |||||  |||||||| |    
T  52808751 ctatctcatctaatataagtttcaaacatggatctttttgtatgtgtgccattctctgtttacgctggcctttatttgacggattgacaaaaatttcagg 52808850  T
Q  631 catggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaagaaatttt 730  Q
    || |||||||||||||||||||||| | ||||| || ||||||||||||| ||||||||| ||||| ||||||       |||||||| |||||||||||    
T  52808851 cacggaagacgttgatgggtcctgtgacagacaacagatacattctaatctaacaaccagtagatgtgttaca-------aaacataatgaagaaatttt 52808943  T
Q  731 atagatacct 740  Q
    ||| ||||||    
T  52808944 ataaatacct 52808953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 54139705 - 54139553
Alignment:
Q  133 gttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacgaattttatcttttaccatttcatttgaatggattcaacaataaa 232  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||||  ||||| |||||||||||||||  ||||||||||||||||||||| |||||    
T  54139705 gttctacatctgcaccatctatcccaaaaagtttcacgcttgtggaca--actacaaattttatcttttactgtttcatttgaatggattcaacgataaa 54139608  T
Q  233 gtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaac 287  Q
    ||||||||| |  |||||||||||||| || ||||||||||||||||||||||||    
T  54139607 gtgaatagccatcatgccataccttgatgtcgccaataatagcagtatgatgaac 54139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 314 - 565
Target Start/End: Complemental strand, 1923947 - 1923704
Alignment:
Q  314 ctgcatctccaggacctagagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaa 413  Q
    |||||||||||| |  | ||| |||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||  ||| |||||||   ||||||||    
T  1923947 ctgcatctccagaagttggaggaatgcccatggctagtcccaacttcttcaaaacctcctcatcattccagtatctagatgaaaagaattttttcagaaa 1923848  T
Q  414 ttatttaccaatttacaccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgacttt---aaaaatagtatttaaacctcatcag 510  Q
     ||||| ||||||||||    ||||| |||||||         |||||||| |||| ||||||||||| |||   |||||| |||| ||||||||||||     
T  1923847 ctatttgccaatttacat---aacaaattatggta--------gaaatgccgaaaccataaaatatgaattttttaaaaatggtatataaacctcatcat 1923759  T
Q  511 tacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatct 565  Q
    ||||||||||||  || |||||||||||||||||||| |||||||| ||||||||    
T  1923758 tacagcaggaccgccattctctatctcatctaaaatatgtttcaaagatggatct 1923704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 39759823 - 39759919
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| | | || || ||||||||||||||| ||| ||||    
T  39759823 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgctatgtgcccacaccccgcgccgcgtcaaattttgggg 39759919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32574484 - 32574386
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || |||||||||||||||||||||||||||||||||  |||||||||||| | | |||||| ||||||||||| |||| |||||||| ||||    
T  32574484 tcaacattacagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgtcggatacgcgcccgcatcccgccccgcatcaatttttgggg 32574386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 133 - 286
Target Start/End: Original strand, 52808309 - 52808462
Alignment:
Q  133 gttctacatctgcaccatctaccccaaaaag-tttcatgcttgaggacacaactacgaattttatcttttaccatttcatttgaa-tggattcaacaata 230  Q
    |||||||||||| | | ||| ||| |||||| |||||||||||||||||  ||||| ||||| |||||||||  ||||||||||| || ||||||| |||    
T  52808309 gttctacatctgtatcctctgcccaaaaaaggtttcatgcttgaggaca--actacaaatttgatcttttactgtttcatttgaaatgaattcaacgata 52808406  T
Q  231 aagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaa 286  Q
    |||  |||||| | |||||||||||| ||||| ||||| | |||||||||||||||    
T  52808407 aaggaaatagccattatgccatacctcgacgtcgccaacattagcagtatgatgaa 52808462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 43823135 - 43823076
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  43823135 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgc 43823076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 28161007 - 28161137
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 100  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | ||||||||||||  |||| |||||| |||| ||||||||||||| || |     
T  28161007 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcgcccgcataccgcaccgcgtcaatttttggtgt 28161105  T
Q  101 tgccgggctgcatttccgcattgacaacagag 132  Q
     |||| || || ||||||| ||||||||||||    
T  28161106 ggccgcgccgcgtttccgctttgacaacagag 28161137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 624 - 695
Target Start/End: Complemental strand, 1923645 - 1923574
Alignment:
Q  624 tttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagat 695  Q
    ||||||||||||||||| | |||||||||||| ||||||| |||||||||||| ||| ||||| ||| ||||    
T  1923645 tttcaagcatggaagacatcgatgggtcctgtgatagacagcatatacattcttatctaacaatcagtagat 1923574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 48663439 - 48663342
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | || |||||||||  | || |||||| |||||||||||||||||| ||||    
T  48663439 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaaaagcgcccgcgtcacgcccgcataccgcgccgcgtcaatttttgggg 48663342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 43823046 - 43822991
Alignment:
Q  77 ccgcgccgcgtcaattttaggggctgccgggctgcatttccgcattgacaacagag 132  Q
    |||||||||||||||||| ||||  |||| || |||||||||| ||||||||||||    
T  43823046 ccgcgccgcgtcaatttttggggtggccgcgccgcatttccgctttgacaacagag 43822991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 16899746 - 16899696
Alignment:
Q  49 gaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||| ||||    
T  16899746 gaaatagcggccgctacgcgcccgcataccgcaccgcgtcaatttttgggg 16899696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 659; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Original strand, 11843696 - 11844441
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  11843696 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcctgctacgcgtccgcatcccgcgccgcgtcaattttaggagc 11843795  T
Q  101 tgccgggctgcatttccgcattgacaacagaggttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacgaattttatcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11843796 tgccgggctgcatttccgcattgacaacagaggttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacaaattttatcttt 11843895  T
Q  201 taccatttcatttgaatggattcaacaataaagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaacaaatgacccaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11843896 taccatttcatttgaatggattcaacaataaagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaacaaatgacccagaa 11843995  T
Q  301 ttttcagaataaactgcatctccag------gacctagagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatg 394  Q
    ||||||  |||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11843996 ttttcatgataaactgcatctccagagtctggacctagagaaatgcccatgactagtccaaacatcttcaaaacccactcatcattccagtatctgcatg 11844095  T
Q  395 gaaagaatcacttcagaaattatttaccaatttacaccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11844096 gaaagaatcacttcagaaattatttaccaatttacaccacaacaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagt 11844195  T
Q  495 atttaaacctcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacg 594  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  11844196 atttaaacctcatcagtacagcaggaccaccaatctctatctcatctaaaataagtttcaaacatggatctctgtcaacttgtgctattcccagtttacg 11844295  T
Q  595 tttgccttcaaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcaga 694  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11844296 aaagccttcaaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtaatagacatcatatacattctaatcaaacaaccagcaga 11844395  T
Q  695 tgagttacaaacttacaaacataacgaagaaattttatagatacct 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11844396 tgagttacaaacttacaaacataacgaagaaattttatagatacct 11844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 3288161 - 3288065
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| |||||||| ||||||||||||||||||||||||  |||||||||||||||| |||||| ||||| |||||||| |||||||||| ||||    
T  3288161 aacagtatagtatttttatattaaatatattagtgtccgcgtcaccgaaatagcgcccgatacgcgcccgcaccccgcgccacgtcaatttttgggg 3288065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5320349 - 5320475
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 100  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | ||||||||||||  |||| || ||| |||||||||||||||||| ||||     
T  5320349 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcgcccacataccgcgccgcgtcaatttttggggt 5320447  T
Q  101 tgccgggctgcatttccgcattgacaac 128  Q
     |||| || || ||||||| ||||||||    
T  5320448 ggccgcgccgcgtttccgctttgacaac 5320475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6807559 - 6807656
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||| ||||||||  |  |||||||| |||||  |||| |||||| |||| ||||||||||||| ||||    
T  6807559 tcaacattatagtattttagtattaaatatattactgtccgcgtca-tgaaatagctcccgcgtcgcgcccgcataccgcaccgcgtcaatttttgggg 6807656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 336 - 706
Target Start/End: Original strand, 23651071 - 23651439
Alignment:
Q  336 aatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaatttacaccaca 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23651071 aatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaaagaatcgcttcagaaattatttaccaatttacaccaca 23651170  T
Q  436 acaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaaacctcatcagtacagcaggaccatcactctctatc 535  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||| || |||||||||||||| |||  |||||||| || ||||||||    
T  23651171 acaatttatggtggaaata-ggaaatgccaaaacaataaaata-gaattaaaaaattgtgtttaaacctcatcattacttcaggaccaccattctctatc 23651268  T
Q  536 tcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagtttgacgtaaatttcaagcatgg 635  Q
    |||||||||||||||||||||||| ||||| |||  |  ||||| ||||  |||||||| |  ||||||| |||  | | |   |||||||| | |||||    
T  23651269 tcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctgaccttcaagtgacggatcggtataaatttccaccatgg 23651368  T
Q  636 aagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaac 706  Q
    ||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | |||||||||    
T  23651369 aagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttacaaac 23651439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 336 - 706
Target Start/End: Original strand, 23736505 - 23736873
Alignment:
Q  336 aatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaatttacaccaca 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23736505 aatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaatgaatcgcttcagaaattatttaccaatttacaccaca 23736604  T
Q  436 acaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaaacctcatcagtacagcaggaccatcactctctatc 535  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||| || |||||||||||||| |||  |||||||| || ||||||||    
T  23736605 acaatttatggtggaaata-ggaaatgccaaaacaataaaata-gaattaaaaaattgtgtttaaacctcatcattacttcaggaccaccattctctatc 23736702  T
Q  536 tcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagtttgacgtaaatttcaagcatgg 635  Q
    |||||||||||||||||||||||| ||||| |||  |  ||||| ||||  |||||||| | |||||||| |||  | | |   |||||||| | |||||    
T  23736703 tcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctggccttcaagtgacggatcggtataaatttccaccatgg 23736802  T
Q  636 aagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaac 706  Q
    ||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | |||||||||    
T  23736803 aagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttacaaac 23736873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 336 - 706
Target Start/End: Original strand, 23619726 - 23620094
Alignment:
Q  336 aatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttaccaatttacaccaca 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23619726 aatgcccatgactagtccaaacatcttcaaaaccttctcatcattccagtatctgcatggaatgaatcgcttcagaaattatttaccaatttacaccaca 23619825  T
Q  436 acaatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaatagtatttaaacctcatcagtacagcaggaccatcactctctatc 535  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||| || ||| |||||||||| |||  |||||||| || ||||||||    
T  23619826 acaatttatggtggaaata-ggaaatgccaaaacaataaaata-gaattaaaaaattgtgtttcaacctcatcattacttcaggaccaccattctctatc 23619923  T
Q  536 tcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagtttgacgtaaatttcaagcatgg 635  Q
    |||||||||||||||||||||||| ||||| |||  |  ||||| ||||  |||||||| | |||||||| |||  | | |   |||||||| | |||||    
T  23619924 tcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctggccttcaagtgacggatcggtataaatttccaccatgg 23620023  T
Q  636 aagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaac 706  Q
    ||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | |||||||||    
T  23620024 aagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttacaaac 23620094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 437 - 706
Target Start/End: Complemental strand, 23707134 - 23706864
Alignment:
Q  437 caatttatggtgaaaatatggaaatgccaaaacaataaaatatgactttaaaaa--tagtatttaaacctcatcagtacagcaggaccatcactctctat 534  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||  | || |||||||||||||| ||||||||||||| || |||||||    
T  23707134 caatttatggtggaaatatggaaatgccaaaacaataaaata-gaatttaaaaaagtggtgtttaaacctcatcattacagcaggaccaccattctctat 23707036  T
Q  535 ctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagtttgacgtaaatttcaagcatg 634  Q
    ||||||||||||||||||||||||||||||| |||  |  ||||| ||||  |||||||| | ||||||||  ||  | | |   |||||||| | ||||    
T  23707035 ctcatctaaaataagtttcaaacatggatctttgttcaagtgtgccgttctacgtttacgctggccttcaagggacggatcggtataaatttccaccatg 23706936  T
Q  635 gaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaac 706  Q
    ||||||  ||| ||||||||| ||||||| || || |||| ||||| ||||||||||||||| |||||||||    
T  23706935 gaagacaatgaagggtcctgtgatagacagcacatgcattttaatctaacaaccagcagatgtgttacaaac 23706864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 52539760 - 52539856
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||| |  ||||| ||||||||||||||||||| ||||    
T  52539760 aacagtatagtattttaatattaaatatattagtgtccgcatcaccgaaatagcgcccgctacacacccgcaccccgcgccgcgtcaatttttgggg 52539856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 52004497 - 52004415
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcg 86  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||| |||||||||||    
T  52004497 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagc-cccgctacgcgcccgcaccccgcgccgcg 52004415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42871961 - 42871900
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  42871961 tcaacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgc 42871900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 23736148 - 23736210
Alignment:
Q  161 aagtttcatgcttgaggacacaactacgaattttatcttttaccatttcatttgaatggattcaa 225  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||||||    
T  23736148 aagtttcatgcttgaggaca--actacaaattttatcttttactatttcatttgaatggattcaa 23736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 23619367 - 23619460
Alignment:
Q  161 aagtttcatgcttgaggacacaactacgaattttatcttttaccatttcatttgaatggattcaacaataaagtgaatagctactatgccatacct 256  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| |||| ||||||||||||||||  | | |||||||||| | |||| |||||||    
T  23619367 aagtttcatgcttgaggaca--actacaaattttatcttttactattttatttgaatggattcaatgacagagtgaatagccattatgacatacct 23619460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 23650712 - 23650805
Alignment:
Q  161 aagtttcatgcttgaggacacaactacgaattttatcttttaccatttcatttgaatggattcaacaataaagtgaatagctactatgccatacct 256  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| |||| ||||||||||||||||  | | |||||||||| | |||| |||||||    
T  23650712 aagtttcatgcttgaggaca--actacaaattttatcttttactattttatttgaatggattcaatgacagagtgaatagccattatgacatacct 23650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 3170376 - 3170297
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaatt 92  Q
    ||||||||||||||||||||||||||||||||  |  |||||||||||||||||||  ||| ||  |||||||||||||||    
T  3170376 gtattttaatattaaatatattagtgtccgcgtca-tgaaatagcgcccgctacgcacccggatttcgcgccgcgtcaatt 3170297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 20993645 - 20993549
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| |||||||||||||||||||||||| |||||| |  ||||||||||| |||||||| || || || || || || |||||||||| ||||    
T  20993645 aacagtatagtattttaatattaaatatattaatgtccgtgtcaccgaaatagctcccgctacacgcccacaccctgcaccacgtcaatttttgggg 20993549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 126187 - 126229
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcg 43  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  126187 tcaacattatagtattttaatattaaatatattagtgtccgcg 126229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 3967863 - 3967915
Alignment:
Q  15 ttttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||| |||||||||||||||||||||||| | | |||||||||||||||||||    
T  3967863 ttttagtattaaatatattagtgtccgcgcca-caaaatagcgcccgctacgcg 3967915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 23707169 - 23707128
Alignment:
Q  387 tctgcatggaaagaatcacttcagaaattatttaccaattta 428  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  23707169 tctgtatggaaagaatcgcttcagaaattatttaccaattta 23707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 8114589 - 8114620
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcg 43  Q
    ||||||||||||||||||||||||||||||||    
T  8114589 gtattttaatattaaatatattagtgtccgcg 8114620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 52398384 - 52398353
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcg 43  Q
    ||||||||||||||||||||||||||||||||    
T  52398384 gtattttaatattaaatatattagtgtccgcg 52398353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 22599485 - 22599455
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgc 42  Q
    |||||||||||||||||||||||||||||||    
T  22599485 gtattttaatattaaatatattagtgtccgc 22599455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24766359 - 24766401
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcg 43  Q
    |||||| || ||||||||| |||||||||||||||||||||||    
T  24766359 tcaacattatagtattttagtattaaatatattagtgtccgcg 24766401  T

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Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 41992773 - 41992869
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  41992773 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgctacgcgcccgcaccccgcgccgcgtcaatttttgggg 41992869  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 37369306 - 37369227
Alignment:
Q  6 agtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgc 85  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||| ||||| ||||||||||    
T  37369306 agtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgtccgctacgcgcccgcaccccgcgccgc 37369227  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33672754 - 33672796
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcg 43  Q
    |||||| || ||||||||| |||||||||||||||||||||||    
T  33672754 tcaacattatagtattttagtattaaatatattagtgtccgcg 33672796  T

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Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 7199697 - 7199788
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaatttt 94  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  7199697 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccaaaatagcgcccgctacgcgcccgcaccccgcgccgcgtcaatttt 7199788  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 48236547 - 48236614
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  48236547 tcaacagtacagtattttaatattaaatatactagtgtccgcgtcaccgaaatagcgcccgctacgcg 48236614  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 55682475 - 55682534
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  55682475 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgc 55682534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37517119 - 37517060
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  37517119 aacagtatagtattttaatattaaatatattagtgtctgcgtcaccgaaatagcgcccgc 37517060  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 41055138 - 41055079
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  41055138 aacagtatagtattttaatattaaatatattagtgtccgcatcaccgaaatagcgcccgc 41055079  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 51469806 - 51469747
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  51469806 aacagtatagtattttaatattaaatatattagtgtccgtgtcaccgaaatagcgcccgc 51469747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 11945088 - 11945006
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgc 85  Q
    ||||||| ||||||||||||||||||||||||||| | ||   |||||||||||||||| || ||| | ||||||||||||||    
T  11945088 aacagtatagtattttaatattaaatatattagtgcctgcatcaccgaaatagcgcccgatatgcgcctgcatcccgcgccgc 11945006  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 423
Target Start/End: Original strand, 48431978 - 48432258
Alignment:
Q  133 gttctacatctgcaccatctaccccaaaaagtttcatgcttgaggacacaactacg--aattttatcttttaccatttcatttgaatggattcaacaata 230  Q
    |||| ||||||||||| || ||||  ||||||| ||||||||||  |||||||||   |||||||||||||||  |||||||||||||  |||||| ||     
T  48431978 gttccacatctgcaccctcgacccataaaagttacatgcttgag--cacaactacacaaattttatcttttactgtttcatttgaatgacttcaacgatg 48432075  T
Q  231 aagtgaatagctactatgccataccttgacgttgccaataatagcagtatgatgaacaaatgacccaaaattttcagaataaactgcatctccaggacct 330  Q
    |||||||| || | |||| ||||||| |||||  |||| |  |||||||| |||||||| |||         |||||||  | || |  ||||||    |    
T  48432076 aagtgaatggccattatgtcatacctggacgtcaccaacatcagcagtatcatgaacaattga---------ttcagaagcagctactactccagagttt 48432166  T
Q  331 agagaaatgcccatgactagtccaaacatcttcaaaaccctctcatcattccagtatctgcatggaaagaatcacttcagaaattatttacca 423  Q
    |||| ||| |||| | || |||| ||| |||||||||||  |||||||||||||||||||||||||||| |||| |||||||| ||| |||||    
T  48432167 agaggaatccccaaggcttgtcccaacttcttcaaaacctcctcatcattccagtatctgcatggaaaggatca-ttcagaaactatctacca 48432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 374613 - 374515
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||| ||| |||||||||||||||||||||||||||||| |   |||||||||||| | |||||| | ||||| || |||||| ||||| ||| ||||    
T  374613 tcaactgtatagtattttaatattaaatatattagtgtccacatcaccgaaatagcgtcagctacgtgcccgcaccctgcgccgtgtcaagttttgggg 374515  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2469419 - 2469489
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtcc 71  Q
    |||| |||| |||||||||||||||||||||||| |||| |||  ||| ||||||| | ||||||||||||    
T  2469419 tcaatagtatagtattttaatattaaatatattaatgtctgcgtcaccaaaatagcactcgctacgcgtcc 2469489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 44420644 - 44420589
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||||||||||||||||||||||||||||  |  |||||||| |||||||||||    
T  44420644 gtattttaatattaaatatattagtgtccgcgtca-tgaaatagcacccgctacgcg 44420589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 48197279 - 48197363
Alignment:
Q  48 cgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggctgccgggctgcatttccgcattgacaacagag 132  Q
    ||||||||||||| ||||||  ||   |||||| ||||||||||||| |||   |||| || |||||||||||||||||||||||    
T  48197279 cgaaatagcgccctctacgccccccgctcccgcaccgcgtcaatttttgggttggccgcgccgcatttccgcattgacaacagag 48197363  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 41055075 - 41055020
Alignment:
Q  77 ccgcgccgcgtcaattttaggggctgccgggctgcatttccgcattgacaacagag 132  Q
    |||||||||||||||||| ||||  |||| || |||||||||| ||||||||||||    
T  41055075 ccgcgccgcgtcaatttttggggtggccgcgccgcatttccgctttgacaacagag 41055020  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29947842 - 29947939
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||| |||| |||  |  |||||||| |||||  |||| |||||| |||| ||||||||||||| ||||    
T  29947842 tcaacattatagtattttagtattaaatatattactgtcagcgtca-tgaaatagctcccgcgccgcgcccgcataccgcaccgcgtcaatttttgggg 29947939  T

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Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 33458035 - 33457939
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| | |||  |||||||||||||||||| ||||    
T  33458035 aacagtatagtattttaatattaaatatatcagtgtccgcgtcaccgaaatagcgcccgctacgcgcctgcactccgcgccgcgtcaatttttgggg 33457939  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 21473202 - 21473285
Alignment:
Q  2 caacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgc 85  Q
    ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| |||||||||||||||    
T  21473202 caacaatatagtattttaatattaaatatattagtgtccgcaccaccaaaatagcgcctgctacgcgttcgcatcccgcgccgc 21473285  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1659273 - 1659370
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||||| ||||||||| |||||||||||||||||||||||  |  | ||||||||||||  |||| |||||| |||||||||||||||||| ||||    
T  1659273 tcaacagtatagtattttagtattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcgcccgcataccgcgccgcgtcaatttttgggg 1659370  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2948828 - 2948915
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtc 88  Q
    |||||| || ||||||||| ||||||||||||||| |||||||  || ||||||||  | |||||||  |||||||||||||||||||    
T  2948828 tcaacattatagtattttagtattaaatatattagcgtccgcgtcacagaaatagcatctgctacgcacccgcatcccgcgccgcgtc 2948915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38433016 - 38433113
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | ||||||||||||  |||| |||||| |||| ||||||||||||| ||||    
T  38433016 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcgcccgcataccgcaccgcgtcaatttttgggg 38433113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 8149202 - 8149257
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||||||||||||||||||||||||||||  |  ||||||||| ||||||||||    
T  8149202 gtattttaatattaaatatattagtgtccgcgtca-tgaaatagcgtccgctacgcg 8149257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 8153826 - 8153881
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||||||||||||||||||||||||||||  |  ||||||||| ||||||||||    
T  8153826 gtattttaatattaaatatattagtgtccgcgtca-tgaaatagcgtccgctacgcg 8153881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 234576 - 234545
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcg 43  Q
    ||||||||||||||||||||||||||||||||    
T  234576 gtattttaatattaaatatattagtgtccgcg 234545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 11591912 - 11591998
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtca 89  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||| |||||| ||||| | ||||||||||||    
T  11591912 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgttacgcgcccgcacctcgcgccgcgtca 11591998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 46066857 - 46066786
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgca 74  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  46066857 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgctacgcgcccgca 46066786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48827275 - 48827407
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||   |||||| ||||||| | ||| |||| ||||     
T  48827275 tcaacagtacagtattttaatattaaatatattagtgtccgccccaccgaaatagtgcctgctacgtccccgcattccgcgccacatcagtttttggggg 48827374  T
Q  101 t-gccgggctgcatttccgcattgacaacagag 132  Q
    | |||| || |||||| ||| ||||||||||||    
T  48827375 tggccgcgccgcatttacgctttgacaacagag 48827407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 43614230 - 43614280
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43614230 gtattttaatattaaatatattagtgtccgcgtaaccgaaatagcgcccgc 43614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 33516103 - 33516044
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| |||||||||| |||||||||||||||||| |||  |||||||||||||||||    
T  33516103 aacagtatagtattttaaaattaaatatattagtgtctgcgtcaccgaaatagcgcccgc 33516044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 36828171 - 36828085
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||||||||||||||||||||||||||||  |  | |||||||||||   |||| |||||| |||||||||||||||||| ||||    
T  36828171 gtattttaatattaaatatattagtgtccgcgtca-tgtaatagcgcccgagtcgcgcccgcataccgcgccgcgtcaatttttgggg 36828085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 37617692 - 37617806
Alignment:
Q  13 tattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttaggggctgccgggctgca 112  Q
    |||||||||||||||||||||||||||||||  |  | ||||||||||||  |||  |||||| |||||||||||||||||| ||||  | || || ||     
T  37617692 tattttaatattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcacccgcataccgcgccgcgtcaatttttggggtggtcgcgccgcg 37617790  T
Q  113 tttccgcattgacaac 128  Q
    ||||||| ||||||||    
T  37617791 tttccgctttgacaac 37617806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 34499997 - 34499930
Alignment:
Q  65 cgcgtccgcatcccgcgccgcgtcaattttaggggctgccgggctgcatttccgcattgacaacagag 132  Q
    |||| |||||| |||||||||||||||||| |||| ||||| || || ||||||| ||||||||||||    
T  34499997 cgcgcccgcataccgcgccgcgtcaatttttggggttgccgcgccgcttttccgctttgacaacagag 34499930  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4968625 - 4968722
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | || |||||||||  |||| || ||| |||||||||||||||||| ||||    
T  4968625 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaaaagcgcccgcgtcgcgcccacataccgcgccgcgtcaatttttgggg 4968722  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 34500038 - 34500007
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcg 43  Q
    ||||||||||||||||||||||||||||||||    
T  34500038 gtattttaatattaaatatattagtgtccgcg 34500007  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 44274321 - 44274275
Alignment:
Q  22 attaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  44274321 attaaatttattagtgtccgcaccaccgaaatagcgcctgctacgcg 44274275  T

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Target: scaffold0101 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 19155 - 19243
Alignment:
Q  6 agtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaatttt 94  Q
    |||| ||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  19155 agtatagtattttaatattaaatatattagtgtccatgtcaccgaaatagcgcccgctacgcgcccgcacctcgcgccgcgtcaatttt 19243  T

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Target: scaffold0368 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8627 - 8688
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  8627 tcaacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgc 8688  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 38567805 - 38567864
Alignment:
Q  3 aacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgc 62  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  38567805 aacagtatagtattttaatattaaatatattagtgtccgcgtcaccgaaatagcgcccgc 38567864  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 35449082 - 35448986
Alignment:
Q  2 caacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||| || ||||||||| |||||||||||||||||||||||  |  |||||||| |||||  |||| |||||| ||| |||||||||||||| ||||    
T  35449082 caacattatagtattttagtattaaatatattagtgtccgcgtca-tgaaatagctcccgcgtcgcgcccgcataccgtgccgcgtcaatttttgggg 35448986  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43265415 - 43265318
Alignment:
Q  1 tcaacagtaaagtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    |||||| || ||||||||| |||||||||||||||||||||||  |  | || |||||||||  |||| |||||| ||| |||||||||||||| ||||    
T  43265415 tcaacattatagtattttagtattaaatatattagtgtccgcgtca-tgtaaaagcgcccgcgtcgcgcccgcataccgtgccgcgtcaatttttgggg 43265318  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 20189809 - 20189763
Alignment:
Q  22 attaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcg 68  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  20189809 attaaatttattagtgtccgcaccaccgaaatagcgcctgctacgcg 20189763  T

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Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 83803 - 83889
Alignment:
Q  12 gtattttaatattaaatatattagtgtccgcgcaaccgaaatagcgcccgctacgcgtccgcatcccgcgccgcgtcaattttagggg 99  Q
    ||||||||||||||||||||||||||||||||  |  | ||||||||||||  |||| |||||| |||||||||||||||||| ||||    
T  83803 gtattttaatattaaatatattagtgtccgcgtca-tgtaatagcgcccgcgtcgcgcccgcataccgcgccgcgtcaatttttgggg 83889  T

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