View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_20 (Length: 253)
Name: NF11769_low_20
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 37737031 - 37737225
Alignment:
| Q |
18 |
gacgtaatacaacaatttatggtgcaattcctttaataaaattaaaaacaatttacggtgcaatttttt-attttaaaattagaagtataatagttttat |
116 |
Q |
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| T |
37737031 |
gacgtaatacaacaatttatggtgcaattcctttaataaaa------acattttacggtgcaatttttttattttaaaattagaagtataatagtttttt |
37737124 |
T |
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| Q |
117 |
tttccnnnnnnntaata---gttacgagttttttgcaatttagaaatatttagaatttattccaaatnnnnnnnnnggggatatcattaacaatgttatt |
213 |
Q |
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| T |
37737125 |
ttttccaaaaaaaaaaaatggttacgagttttttgcaatttagaaatatttagaatttattccaaattaaaaaaatggggatatcattaacgatgttatt |
37737224 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 46491736 - 46491702
Alignment:
| Q |
215 |
ggtggattctagagtgagggttcaactaagtccct |
249 |
Q |
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| T |
46491736 |
ggtggattctagggtgagggttcaactaagtccct |
46491702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 34809037 - 34809005
Alignment:
| Q |
215 |
ggtggattctagagtgagggttcaactaagtcc |
247 |
Q |
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| T |
34809037 |
ggtggattctagagtgagggttcaattaagtcc |
34809005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 127033 - 127067
Alignment:
| Q |
215 |
ggtggattctagagtgagggttcaactaagtccct |
249 |
Q |
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| T |
127033 |
ggtggattctagggtgagggttcaactaagtccct |
127067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 34595981 - 34595948
Alignment:
| Q |
216 |
gtggattctagagtgagggttcaactaagtccct |
249 |
Q |
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| T |
34595981 |
gtggattctagagtgagggttcaactaaatccct |
34595948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 5434823 - 5434783
Alignment:
| Q |
209 |
ttattcggtggattctagagtgagggttcaactaagtccct |
249 |
Q |
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| T |
5434823 |
ttattcggtggattctagagtgagagtccaattaagtccct |
5434783 |
T |
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