View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_23 (Length: 249)
Name: NF11769_low_23
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 4712887 - 4713102
Alignment:
| Q |
14 |
gcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagactta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712887 |
gcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagactta |
4712986 |
T |
|
| Q |
114 |
atattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712987 |
atattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttgga |
4713086 |
T |
|
| Q |
214 |
tgaaaaatgggtggct |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
4713087 |
tgaaaaatgggtggct |
4713102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 4846842 - 4847057
Alignment:
| Q |
14 |
gcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagactta |
113 |
Q |
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|||||||||||||| ||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4846842 |
gcagagatgattctagtttatgacttcatgcaacgtggtactctcagtgaacatctctatggttcggataatgaacctcttaggtggaatcaaagactcg |
4846941 |
T |
|
| Q |
114 |
atattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttgga |
213 |
Q |
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| T |
4846942 |
agattctattaggtgcagcaagggggttgaattatcttcatgaaggtgcgaagcacaatatcatacatcgtgacgttaagagtacaaacatattgttgga |
4847041 |
T |
|
| Q |
214 |
tgaaaaatgggtggct |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
4847042 |
tgaaaaatgggtggct |
4847057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 4863181 - 4862969
Alignment:
| Q |
17 |
gagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagacttaata |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| |||||||||||||||| |||| |||||||||||||| |||||||||| ||||| | |||||| | | |
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| T |
4863181 |
gagatgattctcgtttatgacttcatgcaacgtggcactctccgtgaatatctttatggttcggataatgaacctcttacttggaagaagagacttgaga |
4863082 |
T |
|
| Q |
117 |
ttctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttggatga |
216 |
Q |
| |
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|||| || | ||||||||||| || ||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| || |||||||||||||| |
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| T |
4863081 |
ttctgttgggggcagcaagggggttacattatcttcatgctggtgtaaagcacaatatcatacaccgtgacgtgaagagtaccaacatattgttggatga |
4862982 |
T |
|
| Q |
217 |
aaaatgggtggct |
229 |
Q |
| |
|
||||||||||||| |
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|
| T |
4862981 |
aaaatgggtggct |
4862969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 4698011 - 4698226
Alignment:
| Q |
14 |
gcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagactta |
113 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
4698011 |
gcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaacctcttacttggaagaagagactcg |
4698110 |
T |
|
| Q |
114 |
atattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttgga |
213 |
Q |
| |
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| |||||||| | |||||||| || | ||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| || |||||||| || |
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| T |
4698111 |
agattctattgggggcagcaagaggcctacattatcttcatgcaggtgcgaagcacaatatcatacaccgtgatgtgaagagtaccaacatattgttaga |
4698210 |
T |
|
| Q |
214 |
tgaaaaatgggtggct |
229 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
4698211 |
tgataaatgggtggct |
4698226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 4784658 - 4784871
Alignment:
| Q |
16 |
agagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagacttaat |
115 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| |||| ||||| || |||||| ||||||||| ||||| || || ||| | |
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| T |
4784658 |
agagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgag |
4784757 |
T |
|
| Q |
116 |
attctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttggatg |
215 |
Q |
| |
|
||||||||| |||| || |||| ||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
4784758 |
attctattaggtgccgcgcgggggttgcattatctgcatgcaggtgcgaagcacaatatcatacaccgtgacgtgaagagtacaaacatattgttggatg |
4784857 |
T |
|
| Q |
216 |
aaaaatgggtggct |
229 |
Q |
| |
|
|||||||||||||| |
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| T |
4784858 |
aaaaatgggtggct |
4784871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 4817087 - 4817300
Alignment:
| Q |
16 |
agagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagacttaat |
115 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| |||| ||||| || |||||| ||||||||| ||||| || || ||| | |
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|
| T |
4817087 |
agagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgag |
4817186 |
T |
|
| Q |
116 |
attctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttggatg |
215 |
Q |
| |
|
||||||||| |||| || |||| ||||||||| | |||| |||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
4817187 |
attctattaggtgccgcgcgggggttgcattatttgcatgcaggtgcgaagcacaatatcatacaccgtgatgtgaagagtacaaacatattgttggatg |
4817286 |
T |
|
| Q |
216 |
aaaaatgggtggct |
229 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4817287 |
aaaaatgggtggct |
4817300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 4652653 - 4652600
Alignment:
| Q |
176 |
atacaccgtgacgttaagagtacaaatatattgttggatgaaaaatgggtggct |
229 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||||||||| |||||||||||| |
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|
| T |
4652653 |
atacaccgtgacgtgaagagcaccaacatattgttggatgagaaatgggtggct |
4652600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 4666068 - 4666016
Alignment:
| Q |
176 |
atacaccgtgacgttaagagtacaaatatattgttggatgaaaaatgggtggc |
228 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||||||||||||| |||| |
|
|
| T |
4666068 |
atacaccgtgacgtgaagagcaccaacatattgttggatgaaaaatggatggc |
4666016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 4642897 - 4642790
Alignment:
| Q |
116 |
attctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttggatg |
215 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||| | | |||||| || || ||||| |||||||| ||||| || || ||||||||||||| |
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|
| T |
4642897 |
attctattaggtgccgcaagagggctgaattatcttcatgctgaggtgaagcacaaaataatacatcgtgacgtgaagagcaccaacatattgttggatg |
4642798 |
T |
|
| Q |
216 |
aaaaatgg |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
4642797 |
aaaaatgg |
4642790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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