View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11769_low_24 (Length: 242)
Name: NF11769_low_24
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 127108 - 127335
Alignment:
| Q |
1 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcatttggaaccttctcagttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
127108 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcatttggatccttcttagttca |
127207 |
T |
|
| Q |
101 |
ccacaattatgcagaagagtttactagaac---ttgtgatgataatcaacctcaataaaaattggcaacaccatggtgaaatttatggttgtttatatgt |
197 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127208 |
ccacaaatatgcagaaaagtttactagaacttgttgtgatgataatcaacctcaataaaaattggcaacaccatggtgaaatttatggttgtttatatgt |
127307 |
T |
|
| Q |
198 |
tattttttactgggtttaatggcaaaggt |
226 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
127308 |
t-ttttttactgggtttaatggcaaaggt |
127335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5792200 - 5792085
Alignment:
| Q |
1 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatccta-cctctatctctttctcatttggaaccttctcagttc |
99 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||| || | |||||||||||||| |||| ||| |||||||||| ||||| | | || ||| ||| |
|
|
| T |
5792200 |
caatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctaccctttatctctttcccatttatatcattttcaattc |
5792101 |
T |
|
| Q |
100 |
accacaattatgcaga |
115 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
5792100 |
accacaaatatgcaga |
5792085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46491663 - 46491438
Alignment:
| Q |
1 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcatttggaaccttctcagttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
46491663 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcgtttggatccttctcagttca |
46491564 |
T |
|
| Q |
101 |
ccacaattatgcagaagagtttactagaacttgtgatgataatcaacctcaataaaaattggcaacaccatggtgaaatttatggttgtttatatgttat |
200 |
Q |
| |
|
||| || ||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46491563 |
ccataaatatgcagaaaagttaactagaacttgtgatgataatcaatctcaataataattggcaacaccatggtgaaatttatggttgtttatatattat |
46491464 |
T |
|
| Q |
201 |
tttttactgggtttaatggcaaaggt |
226 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
46491463 |
tttttactgggtttaatagcaaaggt |
46491438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 29685165 - 29685118
Alignment:
| Q |
12 |
attatttgaaaataaaaataagaacatttagttctttccacacacaat |
59 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
29685165 |
attatttgaaaataaaaacaagaacatttattcctttccacacacaat |
29685118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 2028413 - 2028648
Alignment:
| Q |
4 |
tggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcatttggaaccttctcagttcacca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
2028413 |
tggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctaactctttctcgtttggatccttctcagttcacca |
2028512 |
T |
|
| Q |
104 |
caattatgcagaag------------agtttactagaacttgtgatgataatcaacctcaataaaaattggcaacaccatggtgaaat----------tt |
181 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
2028513 |
caaatatgcagaagatgcttgttgaaagttaactagaacttgtgatgataatcaacctaaataaaaattggcaacaccatggtgaaattgaatgaagatt |
2028612 |
T |
|
| Q |
182 |
atggttgtttatatgttattttttactgggtttaat |
217 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2028613 |
atggttgtttatatcttattttttattgggtttaat |
2028648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29333526 - 29333590
Alignment:
| Q |
1 |
caatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacc |
65 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | | ||| |||||||| |||||| |
|
|
| T |
29333526 |
caatggtccaaattatttgaaaataaatataagaacatttattccattctacacacaaccctacc |
29333590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 16449658 - 16449710
Alignment:
| Q |
32 |
agaacatttagttctttccacacacaatcctacctctatctctttctcatttg |
84 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16449658 |
agaacatttattcctttccacacacaatcccacctctatttctttctcatttg |
16449710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 16459232 - 16459284
Alignment:
| Q |
32 |
agaacatttagttctttccacacacaatcctacctctatctctttctcatttg |
84 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16459232 |
agaacatttattcctttccacacacaatcccacctctatttctttctcatttg |
16459284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 202680 - 202732
Alignment:
| Q |
32 |
agaacatttagttctttccacacacaatcctacctctatctctttctcatttg |
84 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
202680 |
agaacatttattcctttccacacacaatcccaccactatttctttctcatttg |
202732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 317517 - 317569
Alignment:
| Q |
32 |
agaacatttagttctttccacacacaatcctacctctatctctttctcatttg |
84 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
317517 |
agaacatttattcctttccacacacaatcccaccactatttctttctcatttg |
317569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University