View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_4 (Length: 477)
Name: NF11769_low_4
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Original strand, 49992956 - 49993413
Alignment:
| Q |
5 |
gagcagcac-agaccccacaagagaaacagcagtacaaagaagcataacaaaagaatcctctttgttattcatatccctacaagccatagctaattcaat |
103 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49992956 |
gagcagcactagaccccacaagagaaacagcagtacaaagaagcataacaaaagaatcctctttgttattcatatccctacaagccatagctaattcaat |
49993055 |
T |
|
| Q |
104 |
cccagcaaacaacaacaacacccctaaaattcccacaggaaactgtttgaaaaaatgagccaatgaacttcccaaaacaaaacccaaaaccaattttgca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993056 |
cccagcaaacaacaacaacacccctaaaattcccacaggaaactgtttgaaaaaatgagccaatgaacttcccaaaacaaaacccaaaaccaattttgca |
49993155 |
T |
|
| Q |
204 |
gcaccaagaattgccacacaccctccactcctcccaccaaatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaac |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49993156 |
gcaccaagaattgccacacaccctccactcctcccaccaaatttatactgtcctgctaatcctccagcaccatgacagcatggcatagcaccaaaccaac |
49993255 |
T |
|
| Q |
304 |
cacccaaaagattcattaacccaactgtcactgagagtgaagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcac |
403 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993256 |
cacccaaaagattcattaacccaactgtcactgaaagtgaagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcac |
49993355 |
T |
|
| Q |
404 |
tgagttcaaaattgacaagggtagttgtggaatagtaccctttataaaaccttgtttc |
461 |
Q |
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| T |
49993356 |
cgagttcaaaattgacaagggtagttgtggaatagtaccctttataaaaccttgtttc |
49993413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 192 - 436
Target Start/End: Original strand, 25797987 - 25798231
Alignment:
| Q |
192 |
accaattttgcagcaccaagaattgccacacaccctccactcctcccaccaaatttatactgtcctgctaatccaccagcaccatgacagcatggcatag |
291 |
Q |
| |
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||||||||| | |||||||||| |||||||||||||||||| || |||||||||||||| |||||||| | |||||| ||||||||||| ||||| | |
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| T |
25797987 |
accaattttcctgcaccaagaagtgccacacaccctccacttcttccaccaaatttatattgtcctgcgagtccaccggcaccatgacaagttggcacac |
25798086 |
T |
|
| Q |
292 |
caccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtgaagttactgaaaagtccttggttggaaataaatcagaggatagtttgca |
391 |
Q |
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| T |
25798087 |
aaccaaaccaacaaccgatcaaattcattagtccaactgtcactgaaattgaagtaactgaaaattccttttctggaaaaagatctgttgataacttaca |
25798186 |
T |
|
| Q |
392 |
aacagctatcactgagttcaaaattgacaagggtagttgtggaat |
436 |
Q |
| |
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||||||||| || ||||||||||||||||| || ||||| ||||| |
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|
| T |
25798187 |
aacagctatgacagagttcaaaattgacaatggaagttgaggaat |
25798231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 51 - 456
Target Start/End: Complemental strand, 1875970 - 1875565
Alignment:
| Q |
51 |
acaaaagaatcctctttgttattcatatccctacaagccatagctaattcaatcccagcaaacaacaacaacacccctaaaattcccacaggaaactgtt |
150 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||| | |||||| | ||||| ||||||||||| | ||| || |||||||| || || |||||||| |
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| T |
1875970 |
acaaaggaatcttctttgctattcatatccctagcacacatagcaagttcaagaccagcaaacaaaagcaaaacacctaaaatcccaactggaaactgca |
1875871 |
T |
|
| Q |
151 |
tgaaaaaatgagccaatgaacttcccaaaacaaaacccaaaaccaattttgcagcaccaagaattgccacacaccctccactcctcccaccaaatttata |
250 |
Q |
| |
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| |||| || ||||| ||| |||| || || || ||||| |||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
1875870 |
ttaaaatgtgtgccaaagaagttcctaacaccaatcccaataccaattttgcaacaccaagaagtgccacacaccctccactccttccaccaaatttata |
1875771 |
T |
|
| Q |
251 |
ctgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtgaagttact |
350 |
Q |
| |
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||||||||||| ||||||||||||||| || ||||||| ||||||||||||| ||| | | |||||| ||||||||||||||||| |||||||| ||| |
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|
| T |
1875770 |
ctgtcctgctagtccaccagcaccatggcaagatggcattgcaccaaaccaacaaccaaccaaattcatcaacccaactgtcactgaaagtgaagtgact |
1875671 |
T |
|
| Q |
351 |
gaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtaccctttataa |
450 |
Q |
| |
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||||||||||| ||||| ||||| || | || |||||||||||||| |||||||| |||| ||| || ||||| ||||| ||||| || |||| |
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| T |
1875670 |
gaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttcaagattgtcaaaggaagttgaggaattgtacctttgataa |
1875571 |
T |
|
| Q |
451 |
aacctt |
456 |
Q |
| |
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|||||| |
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|
| T |
1875570 |
aacctt |
1875565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 51 - 456
Target Start/End: Complemental strand, 1808366 - 1807961
Alignment:
| Q |
51 |
acaaaagaatcctctttgttattcatatccctacaagccatagctaattcaatcccagcaaacaacaacaacacccctaaaattcccacaggaaactgtt |
150 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||||| | |||||| ||||||||||| | ||||| |||||||| || || ||||| |||| |
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|
| T |
1808366 |
acaaaagaatcttctttactattcatatccctagcacacatagcaagttcaataccagcaaacaaaagtaacacacctaaaatcccaactggaaattgtt |
1808267 |
T |
|
| Q |
151 |
tgaaaaaatgagccaatgaacttcccaaaacaaaacccaaaaccaattttgcagcaccaagaattgccacacaccctccactcctcccaccaaatttata |
250 |
Q |
| |
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|||| || ||||| ||| |||| ||||| || ||||| |||||||||||| |||||||| ||| ||||||||||||||||| || ||||||||||| |
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| T |
1808266 |
gcaaaatgtgtgccaaagaagttcctaaaaccaatcccaataccaattttgcaaaaccaagaagtgcaacacaccctccactccttcctccaaatttata |
1808167 |
T |
|
| Q |
251 |
ctgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaaccacccaaaagattcattaacccaactgtcactgagagtgaagttact |
350 |
Q |
| |
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||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||| | | |||||||| |||||||||||||| | ||| || ||| |
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|
| T |
1808166 |
ctgtcctgctagtcctccagcaccatgacaagttggcacagcaccaaaccaagaaccaactaaattcattagtccaactgtcactgaaattgatgtaact |
1808067 |
T |
|
| Q |
351 |
gaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcactgagttcaaaattgacaagggtagttgtggaatagtaccctttataa |
450 |
Q |
| |
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||||| ||| | || || | ||| | |||| ||| ||||||||||||||||||||||| |||||||| || ||||||||||| | ||| || |||| |
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|
| T |
1808066 |
gaaaattccctttcagggaaaagatctgttgataatttacaaacagctatcactgagttcaacattgacaatggaagttgtggaattgcacctttaataa |
1807967 |
T |
|
| Q |
451 |
aacctt |
456 |
Q |
| |
|
|||||| |
|
|
| T |
1807966 |
aacctt |
1807961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 2862460 - 2862338
Alignment:
| Q |
26 |
agaaacagcagtacaaagaagcataacaaaagaatcctctttgttattcatatccctacaagccatagctaattcaatcccagcaaacaacaacaacacc |
125 |
Q |
| |
|
||||||||||| ||||| || ||||| |||||| || | ||| |||||||||| || |||||||||| |||||||||||||||||||| | ||||||| |
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|
| T |
2862460 |
agaaacagcagcacaaacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaattcaatcccagcaaacaaaagcaacacc |
2862361 |
T |
|
| Q |
126 |
cctaaaattcccacaggaaactg |
148 |
Q |
| |
|
||||| || || | ||||||||| |
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|
| T |
2862360 |
cctaatatgccaataggaaactg |
2862338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 2862258 - 2862183
Alignment:
| Q |
228 |
ccactcctcccaccaaatttatactgtcctgctaatccaccagcaccatgacagcatggcatagcaccaaaccaac |
303 |
Q |
| |
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|||||||| || ||||| ||||||| || || ||||||||||| ||||| || || ||||||||||||||||||| |
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|
| T |
2862258 |
ccactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaac |
2862183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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