View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11769_low_7 (Length: 428)
Name: NF11769_low_7
Description: NF11769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11769_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 150 - 410
Target Start/End: Complemental strand, 3030633 - 3030373
Alignment:
| Q |
150 |
gcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtcaggaaaattaagacaagctgattttccct |
249 |
Q |
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| T |
3030633 |
gcctccatcgcagctctccttatctccaccgcatcatttgactccggcaacgtcaaccgccatgcagagtcagcaaaattaagacaagctgattttcctt |
3030534 |
T |
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| Q |
250 |
taagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatccttgacttattgtttttgttaacgttaat |
349 |
Q |
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| T |
3030533 |
taagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatccttgacttattgtttttgttaacgttaat |
3030434 |
T |
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| Q |
350 |
attaggaactctcatctcacaaacccacttgttattgttccttcttcgtactcctcggtac |
410 |
Q |
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| T |
3030433 |
attaggaactctcatctcacaaacccacttgttattgttccttcttcgtactcctcggtac |
3030373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 122 - 410
Target Start/End: Complemental strand, 3021447 - 3021159
Alignment:
| Q |
122 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtca |
221 |
Q |
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| T |
3021447 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtca |
3021348 |
T |
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| Q |
222 |
ggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcc |
321 |
Q |
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| T |
3021347 |
gcaaaattaagacaagctgattttcctttaagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcc |
3021248 |
T |
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| Q |
322 |
ttgacttattgtttttgttaacgttaatattaggaactctcatctcacaaacccacttgttattgttccttcttcgtactcctcggtac |
410 |
Q |
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| T |
3021247 |
ttgacttattatttttgttaacgatattgttaggaactctcatctcacaaacccacttgttattcttcctacgtcgtactcctcggtac |
3021159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 122 - 410
Target Start/End: Complemental strand, 3038316 - 3038028
Alignment:
| Q |
122 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtca |
221 |
Q |
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| T |
3038316 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtca |
3038217 |
T |
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| Q |
222 |
ggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcc |
321 |
Q |
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| T |
3038216 |
gcaaaattaagacaagctgattttcctttaagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcc |
3038117 |
T |
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| Q |
322 |
ttgacttattgtttttgttaacgttaatattaggaactctcatctcacaaacccacttgttattgttccttcttcgtactcctcggtac |
410 |
Q |
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| T |
3038116 |
ttgacttattatttttgttaacgatattgttaggaactctcatctcacaaacccacttgttattcttcctacgtcgtactcctcggtac |
3038028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 3021594 - 3021533
Alignment:
| Q |
17 |
tgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
78 |
Q |
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| T |
3021594 |
tgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3021533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 3038463 - 3038402
Alignment:
| Q |
17 |
tgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
78 |
Q |
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||||||||||||||| || ||||| |||||||||||| ||||||| |||||||||| |||| |
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| T |
3038463 |
tgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3038402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 42553687 - 42553805
Alignment:
| Q |
204 |
aaccgccatgcagagtcaggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggat |
303 |
Q |
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| T |
42553687 |
aaccgccacgcagagtcagcaaaattaagacaagctgatttaccgcgaagtgccagtgcggcaacgtcgtgtgcacgtgctgccatctcaggtgttggat |
42553786 |
T |
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| Q |
304 |
atgttccaagccaaatcct |
322 |
Q |
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||||||||||||||||||| |
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| T |
42553787 |
atgttccaagccaaatcct |
42553805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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