View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_1 (Length: 715)
Name: NF1176_high_1
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 30 - 712
Target Start/End: Original strand, 28113521 - 28114199
Alignment:
| Q |
30 |
agaagtgggaacaaaaatgataatgtaatactcattgacagctcaatagaacacagaaatgcacgtggaatagttctgtctaatcaaataattcattcag |
129 |
Q |
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| T |
28113521 |
agaagtgggaacaaaaatgataatgtaatactcattgacagctcaatagaacacagaaatgcacgtggaatagttctgtctaatcaaataattcattcag |
28113620 |
T |
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| Q |
130 |
ttactaatgaataaataaaaattatatcaattattgtttcttgataataaaaaatggattgttgttttaaaaattcggaacggttgattcaatcagttag |
229 |
Q |
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| T |
28113621 |
ttagtaatgaataaataaaaattatatgaattattgtttcttgataataaaaaatggattgttgttttaaaaattcggaacggttgattcaatcagttgg |
28113720 |
T |
|
| Q |
230 |
gtcagtaattagatattttgaaggagtttgaaggaggaggtcatgagttcaatcatcagaaactaacataactaatttgtataaaccctnnnnnnnttaa |
329 |
Q |
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| T |
28113721 |
gtcagtaattagatattttgaaggagttcgaaggaggaggtcatgagttcaatcatcagaaactaacataataaatttgtataaaccctaaaaaaattaa |
28113820 |
T |
|
| Q |
330 |
accagataaccaatcctatgtttcttgataataaaaaatgaagtaatgttttataaatcggaacagaccggttgggtcgataatcagatattttgaatga |
429 |
Q |
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| T |
28113821 |
atcaaataacttctcctatgtttcttaataataaaaaaagaagtaatgttttataaatcggaacagaccggttggattgataatcagatactttgaatga |
28113920 |
T |
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| Q |
430 |
gtttgaaggaggaggtacgagttcaataatcggaaactaacataactaaccacctgctaattgttaacatttacctataaagaaacaaaatcagacaatt |
529 |
Q |
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| T |
28113921 |
gttcgaaggaggaggtacaagttcaatcatcggaaactaac----gtaaccaccggctaattgttaacatttacctataaagaaacaaaatcagagaatt |
28114016 |
T |
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| Q |
530 |
tgtcctagggtttgacctagattatattgaaccagttcttactatttatttgttatctacttcactcataattgaaccagatgaataagttgaactatga |
629 |
Q |
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| T |
28114017 |
tgtcctagggtttgacctagattatattgaaccagttcttactatttatttgttatctacttcactcataattgaaccagatgaataagttgaactatga |
28114116 |
T |
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| Q |
630 |
ttcatgatatgaataatttccttgttaaaagatgatatgaataatttcttgaagcatcaccaaccattttcctttggttctgc |
712 |
Q |
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| T |
28114117 |
ttcatgatatgaataatttccttgttaaaaaatgatatgaataatttcttgaagtatcaccaaccattttcctttggttctgc |
28114199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 20553248 - 20553214
Alignment:
| Q |
249 |
gaaggagtttgaaggaggaggtcatgagttcaatc |
283 |
Q |
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| T |
20553248 |
gaaggagtttgaaagaggaggtcatgagttcaatc |
20553214 |
T |
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