View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_10 (Length: 397)
Name: NF1176_high_10
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 53 - 396
Target Start/End: Original strand, 10308274 - 10308617
Alignment:
| Q |
53 |
aatcaaaacagcccaatatcatcggataaatctggattcacctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagt |
152 |
Q |
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| T |
10308274 |
aatcaaaacaacccaatatcatcggataaatctggattcacctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagt |
10308373 |
T |
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| Q |
153 |
atagatcgcactcactacatggaggtaacctgatttcatgacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaata |
252 |
Q |
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| T |
10308374 |
atagatcgcactcactacatggaggtaacctgatttcatgacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaata |
10308473 |
T |
|
| Q |
253 |
agttagaaataacctgctaagattagggatggcatttgaaacatctaagcaaagtagtgtattaagccagctttcaatgggatccccagaagcatatctg |
352 |
Q |
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| T |
10308474 |
agttagaaataacctgctaagattagggatggcatttgaaacatctaagcaaagtagtgtattaagccagctttcaacgggatccccagaagcatatctg |
10308573 |
T |
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| Q |
353 |
atggattcactcagttcaattttcttaaaacctgaaagataaaa |
396 |
Q |
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| T |
10308574 |
atggattcactcagttcaattttcttaaaacctgaaagataaaa |
10308617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 92 - 381
Target Start/End: Original strand, 38430949 - 38431239
Alignment:
| Q |
92 |
acctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaacctgatttcat |
191 |
Q |
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| T |
38430949 |
acctgcaaaaataattcactatccttgtggtaggaaaatagagtatcccgattgacatagtatagatcacactcacttgctggaggtaacctgatttcag |
38431048 |
T |
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| Q |
192 |
gacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaataag-ttagaaataacctgctaagattagggatggcatttg |
290 |
Q |
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| || | | | ||| |||| ||| | | || ||||||| |||||| || |||||||| || || | |||||||||||| ||||||||||||||||| |
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| T |
38431049 |
aataacacaaccgtaaatggggattgaaatatggtctcatattccaaagaagtatgaaatgagctttggtataacctgctaatattagggatggcatttg |
38431148 |
T |
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| Q |
291 |
aaacatctaagcaaagtagtgtattaagccagctttcaatgggatccccagaagcatatctgatggattcactcagttcaattttcttaaa |
381 |
Q |
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| T |
38431149 |
aaacatctaagcaaagtaatgtgttaagccagctttcaataggatccccaggagcatatctgatggattcactcagttctattttcttaaa |
38431239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 11192115 - 11192033
Alignment:
| Q |
98 |
aaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaa |
180 |
Q |
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| T |
11192115 |
aaaaataattcactatctttgtgataagaaaatagggtatcccgattgacatagtatagatcacactcactacatggaggtaa |
11192033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 11192016 - 11191958
Alignment:
| Q |
326 |
tcaatgggatccccagaagcatatctgatggattcactcagttcaattttcttaaaacc |
384 |
Q |
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|||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||||| |
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| T |
11192016 |
tcaatgtgatccccagaagcatatcttatggattgattcagttgaattttcttaaaacc |
11191958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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