View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_11 (Length: 383)
Name: NF1176_high_11
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 41 - 373
Target Start/End: Original strand, 14538293 - 14538643
Alignment:
| Q |
41 |
attttgaccagacatgaattgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta |
140 |
Q |
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| T |
14538293 |
attttgaccagacatgaatcgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta |
14538392 |
T |
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| Q |
141 |
tggcgagcacagctgttgtgtcagtcagtctag------------------cctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt |
222 |
Q |
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| T |
14538393 |
tggcgagcacagctgttgtgtcagtcagtctagagaaaatctgactgtctgcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt |
14538492 |
T |
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| Q |
223 |
tgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcagaagtaatagttctggtaatctgttgtggaaa |
322 |
Q |
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| T |
14538493 |
tgtgcagaaatagcatttccgtcatatactttcgtcccccaaccattattagttgattaatgatatcagaagtaataattctggtaatctgttgtggaaa |
14538592 |
T |
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| Q |
323 |
tgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttg |
373 |
Q |
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| T |
14538593 |
tgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttg |
14538643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 14553955 - 14554125
Alignment:
| Q |
202 |
aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag |
300 |
Q |
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| T |
14553955 |
aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac |
14554054 |
T |
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| Q |
301 |
ttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt |
372 |
Q |
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| T |
14554055 |
ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggctttt-caggttttagcatgccttt |
14554125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 14526122 - 14526168
Alignment:
| Q |
326 |
aagggatatatttcttggaatgcttttccagtttttagcatgccttt |
372 |
Q |
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| T |
14526122 |
aagggatatatttcttagaaggcttttccaggttttagcgtgccttt |
14526168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 14548602 - 14548667
Alignment:
| Q |
304 |
tggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcc |
369 |
Q |
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| T |
14548602 |
tggtaatgtcttgtgaaaatggaagggatgtatttcttggaaagctttttcaggtttcagcatgcc |
14548667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 14553813 - 14553869
Alignment:
| Q |
41 |
attttgaccagacatgaattgccgagttctttcattttatattttggagaatgttta |
97 |
Q |
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| T |
14553813 |
attttgaccagtcatggttcaccgtgttctttcattttttattttggagaatgttta |
14553869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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