View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1176_high_14 (Length: 311)
Name: NF1176_high_14
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 42527315 - 42527042
Alignment:
| Q |
13 |
aatatataaacaacatattgtagctactatcatataggaacgctaatggaagtaggtttaaggagttgactcacccgtaaagttacgagttcaacttccg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42527315 |
aatatataaacaacatattgtagctactatcatataggaacgctaatgaaagtaggtttaaggagttgactcacccataaagttacgagttcaacttccg |
42527216 |
T |
|
| Q |
113 |
tcgataatacaagaacatctttaatagattatttgttagtaccacgataaccatttattgtgtgccttaacacatgtcttaaccttgttgaacccctcca |
212 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
42527215 |
tcgataatacaaggacatttttaatagattatttgttagtaccacgataaccattcgttgtgtgccttaacacatgtcttgacctttgtgaacccctcca |
42527116 |
T |
|
| Q |
213 |
aagtctaagtcacgtaaactttacttttactct---nnnnnnnntgacataggtacacatactcacataaactt |
283 |
Q |
| |
|
||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42527115 |
aagcctaactcacgtagactttacttttactctaaaaaaaaaaatgacataggtacacatactcacataaactt |
42527042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University