View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1176_high_15 (Length: 290)
Name: NF1176_high_15
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 75 - 254
Target Start/End: Original strand, 27847188 - 27847367
Alignment:
| Q |
75 |
ctctttcctatcccaaggtgtgtaggagtttttagtgtccactcatctttttccgacatttgaaaatcaatttatgcaagtggtagacagcaagcattat |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
27847188 |
ctctttcctatcccaaggtgtgtaggagtttttagtgtccactcatctttttccgacatttgaaaatcaatttatgcaagtggtagacacccagcattat |
27847287 |
T |
|
| Q |
175 |
ttactctatttagcataagggtaattaacacgttctccattacactaagaaatacgatatttatagctaaaatggcgaat |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27847288 |
ttactatatttagcataagggtaattaacacgttctccattacactaagaaatacgatatttatagctaaaatggcgaat |
27847367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27847131 - 27847174
Alignment:
| Q |
10 |
atatcacatttattacatgactctctctcgtcttttctcttccc |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27847131 |
atatcacatttattacatgactctctctcgtcttttctcttccc |
27847174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University