View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1176_high_16 (Length: 265)

Name: NF1176_high_16
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1176_high_16
NF1176_high_16
[»] chr6 (19 HSPs)
chr6 (15-241)||(34741312-34741538)
chr6 (162-238)||(11541911-11541987)
chr6 (162-238)||(34614456-34614532)
chr6 (15-87)||(30248647-30248719)
chr6 (15-87)||(34301797-34301869)
chr6 (18-88)||(9038641-9038711)
chr6 (15-87)||(8743188-8743259)
chr6 (53-87)||(231108-231142)
chr6 (53-91)||(1730104-1730142)
chr6 (53-87)||(4844400-4844434)
chr6 (53-87)||(11847835-11847869)
chr6 (53-87)||(23398142-23398176)
chr6 (54-87)||(9388529-9388562)
chr6 (54-87)||(34741730-34741763)
chr6 (62-90)||(1779781-1779809)
chr6 (59-87)||(12144047-12144075)
chr6 (133-181)||(34600631-34600679)
chr6 (133-181)||(34627176-34627224)
chr6 (133-181)||(34721907-34721955)
[»] chr7 (20 HSPs)
chr7 (15-92)||(1275698-1275775)
chr7 (15-88)||(41026061-41026134)
chr7 (15-87)||(32814433-32814505)
chr7 (15-88)||(21295150-21295223)
chr7 (15-88)||(41252326-41252399)
chr7 (15-87)||(29286002-29286074)
chr7 (15-87)||(38858298-38858370)
chr7 (15-87)||(39871578-39871650)
chr7 (15-90)||(32872340-32872415)
chr7 (23-87)||(33858839-33858903)
chr7 (15-87)||(39197718-39197790)
chr7 (15-87)||(40300230-40300302)
chr7 (53-88)||(48521028-48521063)
chr7 (53-87)||(19920563-19920597)
chr7 (53-87)||(26255096-26255130)
chr7 (53-87)||(36698134-36698168)
chr7 (54-87)||(20075111-20075144)
chr7 (54-87)||(28060981-28061014)
chr7 (54-87)||(38428411-38428444)
chr7 (60-88)||(7449269-7449297)
[»] chr4 (26 HSPs)
chr4 (15-91)||(5375522-5375598)
chr4 (15-87)||(4035825-4035897)
chr4 (15-87)||(5743624-5743696)
chr4 (15-87)||(20391403-20391474)
chr4 (15-87)||(34273184-34273256)
chr4 (15-91)||(44294785-44294861)
chr4 (15-87)||(45742771-45742843)
chr4 (15-87)||(47806860-47806932)
chr4 (15-89)||(9328205-9328279)
chr4 (15-88)||(1859143-1859216)
chr4 (54-91)||(4036089-4036126)
chr4 (15-87)||(35675885-35675957)
chr4 (15-87)||(52977982-52978054)
chr4 (53-88)||(33413517-33413552)
chr4 (53-87)||(26626005-26626039)
chr4 (53-87)||(30771528-30771562)
chr4 (53-87)||(32032996-32033030)
chr4 (54-87)||(4549629-4549662)
chr4 (54-87)||(20747434-20747467)
chr4 (59-88)||(25708419-25708448)
chr4 (54-87)||(29014064-29014097)
chr4 (62-91)||(39144400-39144429)
chr4 (54-87)||(55631999-55632032)
chr4 (53-89)||(26625741-26625777)
chr4 (53-93)||(37780216-37780256)
chr4 (59-87)||(53277194-53277222)
[»] chr5 (19 HSPs)
chr5 (15-88)||(9828392-9828465)
chr5 (15-87)||(1265949-1266021)
chr5 (15-87)||(22527692-22527764)
chr5 (15-87)||(40004374-40004446)
chr5 (15-93)||(3497765-3497843)
chr5 (18-87)||(26894841-26894910)
chr5 (15-87)||(6673193-6673265)
chr5 (15-87)||(16127259-16127331)
chr5 (15-87)||(34662204-34662276)
chr5 (60-95)||(13661129-13661164)
chr5 (18-97)||(43060379-43060457)
chr5 (53-87)||(7951562-7951596)
chr5 (53-87)||(9020694-9020728)
chr5 (54-88)||(9828657-9828691)
chr5 (53-87)||(10734526-10734560)
chr5 (53-87)||(14913648-14913682)
chr5 (54-87)||(186362-186395)
chr5 (59-87)||(16440931-16440959)
chr5 (53-97)||(26889583-26889627)
[»] chr3 (36 HSPs)
chr3 (15-88)||(9499462-9499535)
chr3 (18-82)||(14758843-14758907)
chr3 (15-87)||(22103894-22103966)
chr3 (15-87)||(25149087-25149159)
chr3 (15-87)||(35868048-35868120)
chr3 (15-87)||(37728713-37728785)
chr3 (15-87)||(44543782-44543854)
chr3 (15-87)||(45252773-45252845)
chr3 (15-90)||(12683147-12683222)
chr3 (15-89)||(54782882-54782956)
chr3 (18-87)||(7181350-7181419)
chr3 (15-87)||(4024052-4024124)
chr3 (15-87)||(7251247-7251319)
chr3 (23-87)||(14428610-14428674)
chr3 (15-87)||(26593730-26593802)
chr3 (54-90)||(31531415-31531451)
chr3 (15-87)||(43868103-43868175)
chr3 (15-87)||(12050358-12050429)
chr3 (18-89)||(15996741-15996812)
chr3 (24-87)||(21756486-21756549)
chr3 (24-91)||(47066930-47066997)
chr3 (54-88)||(4024315-4024349)
chr3 (53-87)||(10220933-10220967)
chr3 (23-93)||(33868442-33868512)
chr3 (54-95)||(33868712-33868754)
chr3 (53-87)||(46049989-46050023)
chr3 (53-87)||(51284065-51284099)
chr3 (50-88)||(54604588-54604626)
chr3 (54-87)||(9779979-9780012)
chr3 (54-87)||(14428873-14428906)
chr3 (54-87)||(16434977-16435010)
chr3 (54-87)||(20862461-20862494)
chr3 (54-87)||(26806115-26806148)
chr3 (54-87)||(36005768-36005801)
chr3 (54-87)||(50647684-50647717)
chr3 (54-87)||(52058985-52059018)
[»] chr1 (35 HSPs)
chr1 (15-88)||(1039346-1039419)
chr1 (15-88)||(1046252-1046325)
chr1 (15-87)||(11741397-11741469)
chr1 (15-87)||(15811197-15811269)
chr1 (15-87)||(16576057-16576129)
chr1 (15-87)||(23541979-23542051)
chr1 (15-87)||(36694854-36694926)
chr1 (15-87)||(36710955-36711027)
chr1 (15-87)||(37951914-37951986)
chr1 (15-87)||(39497433-39497505)
chr1 (15-87)||(45039412-45039484)
chr1 (15-87)||(46075832-46075904)
chr1 (15-87)||(49907021-49907093)
chr1 (15-87)||(52431139-52431211)
chr1 (18-87)||(4102682-4102751)
chr1 (54-90)||(23542243-23542279)
chr1 (15-87)||(30290265-30290337)
chr1 (15-87)||(39363159-39363231)
chr1 (15-87)||(44649629-44649701)
chr1 (51-90)||(25227301-25227340)
chr1 (23-86)||(30289835-30289898)
chr1 (53-87)||(943640-943674)
chr1 (53-87)||(8104291-8104325)
chr1 (53-87)||(38920239-38920273)
chr1 (15-93)||(45335879-45335957)
chr1 (54-87)||(1047992-1048025)
chr1 (54-87)||(9202245-9202278)
chr1 (18-87)||(16456636-16456705)
chr1 (54-87)||(39362934-39362967)
chr1 (54-87)||(39497697-39497730)
chr1 (54-87)||(39750121-39750154)
chr1 (54-87)||(44646535-44646568)
chr1 (54-87)||(44649893-44649926)
chr1 (18-87)||(52601991-52602060)
chr1 (53-93)||(28885836-28885876)
[»] chr8 (28 HSPs)
chr8 (15-87)||(51060-51132)
chr8 (15-87)||(8251898-8251970)
chr8 (15-87)||(13153928-13154000)
chr8 (15-87)||(18754144-18754216)
chr8 (15-87)||(28192140-28192212)
chr8 (15-87)||(32675722-32675794)
chr8 (15-87)||(42885054-42885126)
chr8 (18-96)||(2944240-2944318)
chr8 (15-89)||(8951393-8951467)
chr8 (15-87)||(1774342-1774414)
chr8 (15-87)||(17856742-17856813)
chr8 (15-87)||(18455720-18455792)
chr8 (15-87)||(28579639-28579711)
chr8 (15-87)||(34568490-34568562)
chr8 (15-90)||(7758874-7758949)
chr8 (24-87)||(26016569-26016632)
chr8 (15-90)||(38878718-38878793)
chr8 (54-88)||(11798869-11798903)
chr8 (54-96)||(13154192-13154234)
chr8 (53-87)||(28572046-28572080)
chr8 (53-87)||(39029178-39029212)
chr8 (15-87)||(29279195-29279268)
chr8 (54-87)||(29279460-29279493)
chr8 (54-87)||(40530410-40530443)
chr8 (54-87)||(43653943-43653976)
chr8 (54-87)||(44250859-44250892)
chr8 (53-89)||(17069847-17069883)
chr8 (53-89)||(17578390-17578426)
[»] chr2 (25 HSPs)
chr2 (15-87)||(2438225-2438297)
chr2 (15-87)||(7491844-7491916)
chr2 (15-87)||(8716857-8716929)
chr2 (15-87)||(27560206-27560278)
chr2 (15-87)||(34883813-34883885)
chr2 (15-87)||(40607702-40607774)
chr2 (15-93)||(8841622-8841700)
chr2 (15-93)||(40680721-40680799)
chr2 (15-88)||(36130993-36131066)
chr2 (15-87)||(17408259-17408331)
chr2 (15-87)||(20252210-20252282)
chr2 (15-87)||(34062630-34062702)
chr2 (15-87)||(41450516-41450588)
chr2 (54-88)||(7492108-7492142)
chr2 (53-87)||(11201683-11201717)
chr2 (53-87)||(34113789-34113823)
chr2 (53-90)||(2060313-2060350)
chr2 (54-87)||(2438489-2438522)
chr2 (53-94)||(12889942-12889983)
chr2 (54-87)||(16108215-16108248)
chr2 (54-87)||(22897655-22897688)
chr2 (54-87)||(39833739-39833772)
chr2 (54-87)||(45474351-45474384)
chr2 (59-87)||(22182933-22182961)
chr2 (53-85)||(42629373-42629405)
[»] scaffold0029 (1 HSPs)
scaffold0029 (15-93)||(51647-51725)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-87)||(47640-47712)
[»] scaffold0122 (1 HSPs)
scaffold0122 (15-87)||(12065-12136)
[»] scaffold0604 (1 HSPs)
scaffold0604 (53-87)||(3785-3819)
[»] scaffold0047 (1 HSPs)
scaffold0047 (60-90)||(61861-61891)
[»] scaffold0008 (1 HSPs)
scaffold0008 (53-87)||(259125-259159)
[»] scaffold0002 (1 HSPs)
scaffold0002 (53-87)||(355334-355368)
[»] scaffold0025 (1 HSPs)
scaffold0025 (54-87)||(65378-65411)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 34741538 - 34741312
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtttttaagacgaaaagagttcaa 114  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  34741538 taacaaatgggtcttataaaaagggacaaaaaaaattatcaaatgggtcttataattagggatggagggagtacatgtttttaagacgaaaatagttcaa 34741439  T
Q  115 aagccaaacagtatagttaataatttgcctttactcttttccactcaaacatgagcatgttgtaatgttacatcagtttctgtagatatcttattgatcg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34741438 aagccaaacagtatagttaataatttgcctttactcttttccactcaaacatgagcatgttgtaatgttacatcagtttctgtagatatcttattgatcg 34741339  T
Q  215 tggcttgtctaattaagttgagaatta 241  Q
    |||||||||||||||||||||||||||    
T  34741338 tggcttgtctaattaagttgagaatta 34741312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 11541987 - 11541911
Alignment:
Q  162 aacatgagcatgttgtaatgttacatcagtttctgtagatatcttattgatcgtggcttgtctaattaagttgagaa 238  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  11541987 aacatgagcatgttgtgatattacatcagtttctgcagatatcttattgatcatggcttgtctaattgagttgagaa 11541911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 34614532 - 34614456
Alignment:
Q  162 aacatgagcatgttgtaatgttacatcagtttctgtagatatcttattgatcgtggcttgtctaattaagttgagaa 238  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  34614532 aacatgagcatgttgtgatattacatcagtttctgcagatatcttattgatcatggcttgtctaattgagttgagaa 34614456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 30248719 - 30248647
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  30248719 taacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 34301797 - 34301869
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  34301797 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 9038711 - 9038641
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    |||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  9038711 caaaggggtcttataaaaagggacaaatgattttttcaaaagggtcttataattagggacggagggagtac 9038641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 8743259 - 8743188
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  8743259 taacaaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 231108 - 231142
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  231108 tcaaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 1730104 - 1730142
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacatg 91  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  1730104 tcaaaaggatcttataattagggacggagggagtacatg 1730142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 4844434 - 4844400
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  4844434 tcaaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 11847835 - 11847869
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  11847835 tcaaaagggtcttataattagggacggagggagta 11847869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 23398142 - 23398176
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  23398142 tcaaaagggtcttataattagggacggagggagta 23398176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 9388562 - 9388529
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  9388562 caaaagggtcttataattagggacggagggagta 9388529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 34741730 - 34741763
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  34741730 caaaagggtcttataattagggacggagggagta 34741763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 1779809 - 1779781
Alignment:
Q  62 tcttataattagggacggagggagtacat 90  Q
    |||||||||||||||||||||||||||||    
T  1779809 tcttataattagggacggagggagtacat 1779781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 12144047 - 12144075
Alignment:
Q  59 gggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||||    
T  12144047 gggtcttataattagggacggagggagta 12144075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 34600679 - 34600631
Alignment:
Q  133 aataatttgcctttactcttttccactcaaacatgagcatgttgtaatg 181  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||| ||||    
T  34600679 aataattttcctttcctcttttccacacaaatatgagcatgttgcaatg 34600631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 34627224 - 34627176
Alignment:
Q  133 aataatttgcctttactcttttccactcaaacatgagcatgttgtaatg 181  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||| ||||    
T  34627224 aataattttcctttcctcttttccacacaaatatgagcatgttgcaatg 34627176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 34721955 - 34721907
Alignment:
Q  133 aataatttgcctttactcttttccactcaaacatgagcatgttgtaatg 181  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||| ||||    
T  34721955 aataattttcctttcctcttttccacacaaatatgagcatgttgcaatg 34721907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1275698 - 1275775
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgt 92  Q
    ||||||| |||||||||||||||||||        |||||||| |||||||||||||||||| |||||||||||||||    
T  1275698 taacaaaggggtcttataaaaagggacaaaaaaaattatcaaaagggtcttataattagggatggagggagtacatgt 1275775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 41026061 - 41026134
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    |||||||||||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  41026061 taacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 41026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 32814505 - 32814433
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  32814505 taacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 21295223 - 21295150
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  21295223 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 21295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 41252326 - 41252399
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  41252326 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 41252399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 29286002 - 29286074
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  29286002 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 38858370 - 38858298
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  38858370 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 39871578 - 39871650
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  39871578 taacaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 32872340 - 32872415
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacat 90  Q
    ||||||| || ||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||||    
T  32872340 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtacat 32872415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 33858839 - 33858903
Alignment:
Q  23 gggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  33858839 gggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 39197790 - 39197718
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  39197790 taacaaaagagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 40300302 - 40300230
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||         | ||||| |||||||||||||||||||||||||||||    
T  40300302 taacaaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 48521063 - 48521028
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||| ||||||||||||||||||||||||||||||    
T  48521063 tcaaaagggtcttataattagggacggagggagtac 48521028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 19920597 - 19920563
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  19920597 tcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 26255130 - 26255096
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  26255130 tcaaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 36698134 - 36698168
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  36698134 tcaaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 20075111 - 20075144
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  20075111 caaaagggtcttataattagggacggagggagta 20075144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 28060981 - 28061014
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  28060981 caaaagggtcttataattagggacggagggagta 28061014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 38428411 - 38428444
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  38428411 caaaagggtcttataattagggacggagggagta 38428444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 7449297 - 7449269
Alignment:
Q  60 ggtcttataattagggacggagggagtac 88  Q
    |||||||||||||||||||||||||||||    
T  7449297 ggtcttataattagggacggagggagtac 7449269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 5375522 - 5375598
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatg 91  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||||||    
T  5375522 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtacatg 5375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4035897 - 4035825
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  4035897 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 4035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 5743624 - 5743696
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  5743624 taacaaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 20391403 - 20391474
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  20391403 taacaaatgggtcttataaaaagggacaaattttttt-tcaaaagggtcttataattagggacggagggagta 20391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 34273184 - 34273256
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  34273184 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 44294861 - 44294785
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatg 91  Q
    ||||||| |||||||||||||| ||||        || ||||| |||||||||||||||||||||||||||||||||    
T  44294861 taacaaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtacatg 44294785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 45742771 - 45742843
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  45742771 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 47806932 - 47806860
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  47806932 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 9328205 - 9328279
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||||    
T  9328205 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtaca 9328279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 1859216 - 1859143
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || |||||  |||||||||||||||||||||||||||||    
T  1859216 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtac 1859143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 4036089 - 4036126
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtacatg 91  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4036089 caaaagggtcttataattagggacggagggagtacatg 4036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 35675885 - 35675957
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  35675885 taacaaaggagtcttataaaaagggacaaatttttttttcaaaagggtcttataattagggacggagggagta 35675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 52978054 - 52977982
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  52978054 taacaaaggagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 33413552 - 33413517
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33413552 tcaaaagggtcttataattagggacggagggagtac 33413517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 26626005 - 26626039
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  26626005 tcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 30771562 - 30771528
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  30771562 tcaaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 32032996 - 32033030
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  32032996 tcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 4549662 - 4549629
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  4549662 caaaagggtcttataattagggacggagggagta 4549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 20747434 - 20747467
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  20747434 caaaagggtcttataattagggacggagggagta 20747467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 25708448 - 25708419
Alignment:
Q  59 gggtcttataattagggacggagggagtac 88  Q
    ||||||||||||||||||||||||||||||    
T  25708448 gggtcttataattagggacggagggagtac 25708419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 29014097 - 29014064
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  29014097 caaaagggtcttataattagggacggagggagta 29014064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 39144429 - 39144400
Alignment:
Q  62 tcttataattagggacggagggagtacatg 91  Q
    ||||||||||||||||||||||||||||||    
T  39144429 tcttataattagggacggagggagtacatg 39144400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 55632032 - 55631999
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  55632032 caaaagggtcttataattagggacggagggagta 55631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 26625777 - 26625741
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  26625777 tcaaaagggtcctataattagggacggagggagtaca 26625741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 37780216 - 37780256
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  37780216 tcaaaagggtcttataactagggacggaggtagtacatgtt 37780256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 53277194 - 53277222
Alignment:
Q  59 gggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||||    
T  53277194 gggtcttataattagggacggagggagta 53277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9828465 - 9828392
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  9828465 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 9828392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 1266021 - 1265949
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  1266021 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 22527764 - 22527692
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  22527764 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 40004374 - 40004446
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  40004374 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 3497765 - 3497843
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||| |||||||||||| |||||    
T  3497765 taacaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaggaacggagggagtagatgtt 3497843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 26894841 - 26894910
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||         || ||||| |||||||||||||||||||||||||||||    
T  26894841 caaatgggtcttataaaaagggataaaaaaaattctcaaaagggtcttataattagggacggagggagta 26894910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 6673193 - 6673265
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||  ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  6673193 taacaaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 16127331 - 16127259
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||  ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  16127331 taacaaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 34662276 - 34662204
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||         | ||||| |||||||||||||||||||||||||||||    
T  34662276 taacaaaggggtcttataaaaagggacaaaaaaaactctcaaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 13661129 - 13661164
Alignment:
Q  60 ggtcttataattagggacggagggagtacatgtttt 95  Q
    |||||||||||||||||||||||||||| |||||||    
T  13661129 ggtcttataattagggacggagggagtatatgtttt 13661164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 43060379 - 43060457
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgttttta 97  Q
    |||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||| |||| |||||||||    
T  43060379 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagta-atgttttta 43060457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 7951596 - 7951562
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  7951596 tcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 9020728 - 9020694
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  9020728 tcaaaagggtcttataattagggacggagggagta 9020694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 9828657 - 9828691
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtac 88  Q
    |||| ||||||||||||||||||||||||||||||    
T  9828657 caaaagggtcttataattagggacggagggagtac 9828691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 10734526 - 10734560
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  10734526 tcaaaagggtcttataattagggacggagggagta 10734560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 14913682 - 14913648
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  14913682 tcaaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 186362 - 186395
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  186362 caaaagggtcttataattagggacggagggagta 186395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 16440959 - 16440931
Alignment:
Q  59 gggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||||    
T  16440959 gggtcttataattagggacggagggagta 16440931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 26889627 - 26889583
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacatgttttta 97  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||    
T  26889627 tcaaaagggtcctataattagggacggagggagtatatattttta 26889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 9499462 - 9499535
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  9499462 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 9499535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 14758907 - 14758843
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagg 82  Q
    ||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||    
T  14758907 caaatgggtcttataaaaagggacaaaaaaaattatcaaaagggtcttataattagggacggagg 14758843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 22103894 - 22103966
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  22103894 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 25149087 - 25149159
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  25149087 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 35868048 - 35868120
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  35868048 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 37728785 - 37728713
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  37728785 taacaaaggggtcttataaaaagggacaacaaatattctcaaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 44543854 - 44543782
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  44543854 taacaaaggggtcttataaaaagggacaaaagaaattctcaaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 45252845 - 45252773
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  45252845 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 12683147 - 12683222
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacat 90  Q
    ||||||| |||||||||||||||||||        || |||||  |||||||||||||||||||||||||||||||    
T  12683147 taacaaaggggtcttataaaaagggactaaaaaaattctcaaaatggtcttataattagggacggagggagtacat 12683222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 54782882 - 54782956
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||| ||||||||||    
T  54782882 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacgaagggagtaca 54782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7181419 - 7181350
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  7181419 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4024124 - 4024052
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||         | ||||| |||||||||||||||||||||||||||||    
T  4024124 taacaaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7251247 - 7251319
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||||| |||||||||||||||||        || | ||| |||||||||||||||||||||||||||||    
T  7251247 taacaaatgagtcttataaaaagggacaaaaaaaattcttaaaggggtcttataattagggacggagggagta 7251319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 14428674 - 14428610
Alignment:
Q  23 gggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  14428674 gggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 26593730 - 26593802
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  26593730 taacaaaagagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 31531415 - 31531451
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtacat 90  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31531415 caaaagggtcttataattagggacggagggagtacat 31531451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 43868175 - 43868103
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||  ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  43868175 taacaaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 12050358 - 12050429
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||| ||        || ||||| |||||||||||||||||||||||||||||    
T  12050358 taacaaatgggtcttataaaaaggtacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 15996741 - 15996812
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtaca 89  Q
    |||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||| ||||||    
T  15996741 caaaggggtcttataaaaagggacaaatttttttttcaaaagggtcttataattagggacggaggtagtaca 15996812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 21756549 - 21756486
Alignment:
Q  24 ggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  21756549 ggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 47066997 - 47066930
Alignment:
Q  24 ggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatg 91  Q
    ||||||||||||||||||        || ||||| |||||||||||||||||||||||| ||||||||    
T  47066997 ggtcttataaaaagggacaaaaaatattctcaaaagggtcttataattagggacggaggaagtacatg 47066930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 4024315 - 4024349
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtac 88  Q
    |||| ||||||||||||||||||||||||||||||    
T  4024315 caaaagggtcttataattagggacggagggagtac 4024349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 10220967 - 10220933
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  10220967 tcaaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 33868512 - 33868442
Alignment:
Q  23 gggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    |||||||||||||||||||        || ||||| || |||||||||||||||||||||||||| |||||    
T  33868512 gggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtatatgtt 33868442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 33868712 - 33868754
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta-catgtttt 95  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  33868712 caaaagggtcttataattagggacggagggagtatcatgtttt 33868754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 46049989 - 46050023
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  46049989 tcaaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 51284065 - 51284099
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  51284065 tcaaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 54604588 - 54604626
Alignment:
Q  50 ttatcaaatgggtcttataattagggacggagggagtac 88  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  54604588 ttatcaaaagggtcttataattaaggacggagggagtac 54604626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 9780012 - 9779979
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  9780012 caaaagggtcttataattagggacggagggagta 9779979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 14428873 - 14428906
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  14428873 caaaagggtcttataattagggacggagggagta 14428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 16435010 - 16434977
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  16435010 caaaagggtcttataattagggacggagggagta 16434977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 20862461 - 20862494
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  20862461 caaaagggtcttataattagggacggagggagta 20862494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 26806148 - 26806115
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  26806148 caaaagggtcttataattagggacggagggagta 26806115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 36005768 - 36005801
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  36005768 caaaagggtcttataattagggacggagggagta 36005801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 50647717 - 50647684
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  50647717 caaaagggtcttataattagggacggagggagta 50647684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 52059018 - 52058985
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  52059018 caaaagggtcttataattagggacggagggagta 52058985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1039346 - 1039419
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  1039346 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 1039419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1046252 - 1046325
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    ||||||| |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  1046252 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 1046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 11741469 - 11741397
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  11741469 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 11741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 15811197 - 15811269
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  15811197 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 16576057 - 16576129
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        |||||||| | |||||||||||||||||||||||||||    
T  16576057 taacaaaggggtcttataaaaagggacaaaaaaaattatcaaaagagtcttataattagggacggagggagta 16576129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 23542051 - 23541979
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  23542051 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 36694926 - 36694854
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  36694926 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 36711027 - 36710955
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  36711027 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 37951914 - 37951986
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  37951914 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 37951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 39497505 - 39497433
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  39497505 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 45039484 - 45039412
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  45039484 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 45039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 46075832 - 46075904
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  46075832 taacaaaagggtcttataaaaagggacaaaaaatattctcaaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 49907093 - 49907021
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  49907093 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 52431139 - 52431211
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  52431139 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 52431211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 4102682 - 4102751
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  4102682 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 4102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23542243 - 23542279
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtacat 90  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23542243 caaaagggtcttataattagggacggagggagtacat 23542279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 30290337 - 30290265
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||||||  ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  30290337 taacaaagaggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 39363159 - 39363231
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  39363159 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 44649701 - 44649629
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  44649701 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 25227340 - 25227301
Alignment:
Q  51 tatcaaatgggtcttataattagggacggagggagtacat 90  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  25227340 tatcaaaagggtcttataattagggacggaggtagtacat 25227301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 30289835 - 30289898
Alignment:
Q  23 gggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagt 86  Q
    |||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||    
T  30289835 gggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 943640 - 943674
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  943640 tcaaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 8104291 - 8104325
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  8104291 tcaaaggggtcttataattagggacggagggagta 8104325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 38920273 - 38920239
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  38920273 tcaaaagggtcttataattagggacggagggagta 38920239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 45335957 - 45335879
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||||| |||||||||||||| ||||        || ||||| |||||||||||||||||| |||||||||| |||||    
T  45335957 taacaaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagggagggagggagtaaatgtt 45335879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 1048025 - 1047992
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  1048025 caaaagggtcttataattagggacggagggagta 1047992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 9202278 - 9202245
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  9202278 caaaagggtcttataattagggacggagggagta 9202245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16456705 - 16456636
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||        || ||| | |||||||||||||||||||||||||||||    
T  16456705 caaaggggtcttataaaaagggacagaaaaatttctcagaagggtcttataattagggacggagggagta 16456636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 39362967 - 39362934
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  39362967 caaaagggtcttataattagggacggagggagta 39362934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 39497697 - 39497730
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  39497697 caaaagggtcttataattagggacggagggagta 39497730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 39750154 - 39750121
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  39750154 caaaagggtcttataattagggacggagggagta 39750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 44646535 - 44646568
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  44646535 caaaagggtcttataattagggacggagggagta 44646568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 44649893 - 44649926
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  44649893 caaaagggtcttataattagggacggagggagta 44649926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 52602060 - 52601991
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||        || | ||| |||||||||||||||||||||||||||||    
T  52602060 caaaggggtcttataaaaagggacaaaaaaaattcttaaaagggtcttataattagggacggagggagta 52601991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 28885876 - 28885836
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  28885876 tcaaaagggtcttataattagggacggaggtagtatatgtt 28885836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 51060 - 51132
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  51060 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 8251898 - 8251970
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  8251898 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 13154000 - 13153928
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  13154000 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 18754216 - 18754144
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  18754216 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 18754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 28192140 - 28192212
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  28192140 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 32675722 - 32675794
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  32675722 taacaaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 42885126 - 42885054
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  42885126 taacaaaggggtcttataaaaagggacaattttttttttcaaaagggtcttataattagggacggagggagta 42885054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2944240 - 2944318
Alignment:
Q  18 caaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgttttt 96  Q
    |||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||  |||||||    
T  2944240 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtaattgttttt 2944318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 8951393 - 8951467
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||||    
T  8951393 taacaaaagagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtaca 8951467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 1774414 - 1774342
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||||| |||||||||||| ||||        || ||||| |||||||||||||||||||||||||||||    
T  1774414 taacaaatgagtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 17856742 - 17856813
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  17856742 taacaaaggggtcttataaaaagggacaatttttttt-tcaaaagggtcttataattagggacggagggagta 17856813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 18455792 - 18455720
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || | ||| |||||||||||||||||||||||||||||    
T  18455792 taacaaaggggtcttataaaaagggacaaaaaaaattcttaaaagggtcttataattagggacggagggagta 18455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 28579711 - 28579639
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  28579711 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 34568562 - 34568490
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| ||||||||||| |||||||        || ||||| |||||||||||||||||||||||||||||    
T  34568562 taacaaaagggtcttataataagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 7758874 - 7758949
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacat 90  Q
    ||||||| | |||||||||||||||||        || ||||| | ||||||||||||||||||||||||||||||    
T  7758874 taacaaaggagtcttataaaaagggacaaaaaatattctcaaaagtgtcttataattagggacggagggagtacat 7758949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 26016632 - 26016569
Alignment:
Q  24 ggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  26016632 ggtcttataaaaagggacaaatttttttttcaaaagggtcttataattagggacggagggagta 26016569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 38878793 - 38878718
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacat 90  Q
    |||||||  ||||||||||||||||||        || ||||| ||||||||||||||| ||||||||||||||||    
T  38878793 taacaaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagacggagggagtacat 38878718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 11798869 - 11798903
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtac 88  Q
    |||| ||||||||||||||||||||||||||||||    
T  11798869 caaaagggtcttataattagggacggagggagtac 11798903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 13154192 - 13154234
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtacatgttttt 96  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  13154192 caaaagggtcttataattagggacggagggagtagattttttt 13154234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 28572080 - 28572046
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  28572080 tcaaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 39029212 - 39029178
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  39029212 tcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 29279268 - 29279195
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatggg-tcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        |||||||| ||| ||||||||||||||||||||||||||    
T  29279268 taacaaagggatcttataaaaagggacaaaaaaaattatcaaaaggggtcttataattagggacggagggagta 29279195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 29279460 - 29279493
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  29279460 caaaagggtcttataattagggacggagggagta 29279493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 40530410 - 40530443
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  40530410 caaaagggtcttataattagggacggagggagta 40530443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 43653976 - 43653943
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  43653976 caaaagggtcttataattagggacggagggagta 43653943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 44250892 - 44250859
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  44250892 caaaagggtcttataattagggacggagggagta 44250859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 17069847 - 17069883
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17069847 tcaaaagggtcttataattagggacggaggtagtaca 17069883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 17578426 - 17578390
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtaca 89  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17578426 tcaaaagggtcttataattagggacggaggtagtaca 17578390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 2438297 - 2438225
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  2438297 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 7491916 - 7491844
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||||| |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  7491916 taacaaatgagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 8716857 - 8716929
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  8716857 taacaaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 27560278 - 27560206
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  27560278 taacaaaggggtcttataaaaagggacaaaaatttttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 34883813 - 34883885
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  34883813 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 40607774 - 40607702
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  40607774 taacaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 8841622 - 8841700
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||| |||||||||||||| |||||    
T  8841622 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggagggagtatatgtt 8841700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 40680799 - 40680721
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||| |||||| |||||    
T  40680799 taacaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggatggagtatatgtt 40680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 36130993 - 36131066
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtac 88  Q
    |||||||  ||||||||||||||||||        || ||||| ||||||||||||||||||||||||||||||    
T  36130993 taacaaaaaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtac 36131066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 17408259 - 17408331
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  17408259 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 20252282 - 20252210
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| ||||||||||||||| |||        || ||||| |||||||||||||||||||||||||||||    
T  20252282 taacaaaggggtcttataaaaagtgacaaaagaaattctcaaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 34062630 - 34062702
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  34062630 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 41450588 - 41450516
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| || ||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  41450588 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 7492108 - 7492142
Alignment:
Q  54 caaatgggtcttataattagggacggagggagtac 88  Q
    |||| ||||||||||||||||||||||||||||||    
T  7492108 caaaagggtcttataattagggacggagggagtac 7492142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 11201717 - 11201683
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  11201717 tcaaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 34113789 - 34113823
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  34113789 tcaaaagggtcttataattagggacggagggagta 34113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 2060350 - 2060313
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacat 90  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  2060350 tcaaaagggtcttataattagggacggaggtagtacat 2060313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 2438489 - 2438522
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  2438489 caaaagggtcttataattagggacggagggagta 2438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 12889983 - 12889942
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagtacatgttt 94  Q
    ||||| ||||| |||||||||||||||||| |||||||||||    
T  12889983 tcaaaagggtcctataattagggacggaggtagtacatgttt 12889942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 16108248 - 16108215
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  16108248 caaaagggtcttataattagggacggagggagta 16108215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 22897655 - 22897688
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  22897655 caaaagggtcttataattagggacggagggagta 22897688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 39833772 - 39833739
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  39833772 caaaagggtcttataattagggacggagggagta 39833739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 45474384 - 45474351
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  45474384 caaaagggtcttataattagggacggagggagta 45474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 22182933 - 22182961
Alignment:
Q  59 gggtcttataattagggacggagggagta 87  Q
    |||||||||||||||||||||||||||||    
T  22182933 gggtcttataattagggacggagggagta 22182961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 42629405 - 42629373
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggag 85  Q
    ||||| |||||||||||||||||||||||||||    
T  42629405 tcaaaagggtcttataattagggacggagggag 42629373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 51647 - 51725
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagtacatgtt 93  Q
    ||||||| || ||||||||||||||||        || ||||| ||||||||||||||||||||||||||||| |||||    
T  51647 taacaaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatatgtt 51725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 47712 - 47640
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| | |||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  47712 taacaaaggagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 12136 - 12065
Alignment:
Q  15 taacaaatgggtcttataaaaagggacnnnnnnnnttatcaaatgggtcttataattagggacggagggagta 87  Q
    ||||||| |||||||||||||||||||        || ||||| |||||||||||||||||||||||||||||    
T  12136 taacaaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagta 12065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 3785 - 3819
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  3785 tcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 61861 - 61891
Alignment:
Q  60 ggtcttataattagggacggagggagtacat 90  Q
    |||||||||||||||||||||||||||||||    
T  61861 ggtcttataattagggacggagggagtacat 61891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 259125 - 259159
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  259125 tcaaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 355334 - 355368
Alignment:
Q  53 tcaaatgggtcttataattagggacggagggagta 87  Q
    ||||| |||||||||||||||||||||||||||||    
T  355334 tcaaaagggtcttataattagggacggagggagta 355368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 65411 - 65378
Alignment:
Q  54 caaatgggtcttataattagggacggagggagta 87  Q
    |||| |||||||||||||||||||||||||||||    
T  65411 caaaagggtcttataattagggacggagggagta 65378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University