View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_19 (Length: 241)
Name: NF1176_high_19
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3220446 - 3220205
Alignment:
| Q |
1 |
catcacattcttagcaaggggttgaacccactcctccccttatttcaacattaatatttttatttcttttcctaataaaactatagtcttcataaacaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220446 |
catcacattcttagcaaggggttgaacccactcctccccttatttcaacattaatatctttatttcttttcctaataaaactatagtcttcataaacaat |
3220347 |
T |
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| Q |
101 |
gta----agtcataaaaaattaaacatttttctttcttcttctatgtctcactgctcttcattatttgcaacaaacaaacaaaatccacaattatgttgt |
196 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220346 |
gtatgtaagtcataaaaaattaaacatttttctttcttct---atgtctcactgctcttcattatttgcaacaaacaaacaaaatccacaattatgttgt |
3220250 |
T |
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| Q |
197 |
tttaccattttgccacgatgtatacctcgaccttatttttagtat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220249 |
tttaccattttgccacgatgtatacctcgaccttatttttagtat |
3220205 |
T |
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