View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_20 (Length: 230)
Name: NF1176_high_20
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 26710966 - 26711172
Alignment:
| Q |
27 |
acatcatcaaccaaatatataaagctatttccatgtcggcatctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacatt--- |
123 |
Q |
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| T |
26710966 |
acataatcaaccaaatatataaagctatttctatgtcggcacctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacattaaa |
26711065 |
T |
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| Q |
124 |
--nnnnnnnnnnnnnnntgagtttagccgaataatatcattcttgaaatgatacataatgatagttaatataattttagccgaagaatattaaaaaacta |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26711066 |
aaaataaaaaataaaaatgagtttagccgaataatatcattcttgaaatgatacataatggtagttaatataattttagccgaataatattaaaaaacta |
26711165 |
T |
|
| Q |
222 |
gttccac |
228 |
Q |
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|| |||| |
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| T |
26711166 |
gtcccac |
26711172 |
T |
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