View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_high_5 (Length: 500)
Name: NF1176_high_5
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 101 - 492
Target Start/End: Original strand, 52269981 - 52270372
Alignment:
| Q |
101 |
aactctttcccctgtcttaattgacttcttggttaacttaaatgcttcgaatatagattcattttgctgaacttcaacattcttgacacaacgctttgta |
200 |
Q |
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| T |
52269981 |
aactctttcccctgtcttaattgacttcttggttaacttaaatgcttcgaatatagattcattttgctgaactccaacattcttgacacaacgctttgta |
52270080 |
T |
|
| Q |
201 |
tgatttgaggacctgcttaatacctccatcagcgatacatttgactcttgagatttagaagttgaagtggcatatttgttctgtgtatttctttggaatt |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52270081 |
cgatttgaggacctgcttaatacctccatcagtgatacatttgactcttgagatttagaagttgaagtggcatatttgttctgagtatttctttggaatt |
52270180 |
T |
|
| Q |
301 |
tggtagaaacaactttgggtgcttgactctcccttataatctgagttacaaccaaacagagaaaccagcagtcagtatgacagtagaatataaatgacgt |
400 |
Q |
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| T |
52270181 |
tggtagaaacaactttgggtgcttgactctcccttataatctgagttacaaccaaacagagaaaccagcagtcagtatgacagtagaatataaatgacgt |
52270280 |
T |
|
| Q |
401 |
aaacaatattgcatatttaaatagcatttacaaaaggagaggtcgatttgaataagcatgtttgttaccatcacagttctagtagtattatc |
492 |
Q |
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| T |
52270281 |
aaacaatattgcatatttaaatagcatttacaaaaggagaggtcgattccaataagcatgtttgttaccatcacagttctagtagtattatc |
52270372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 693866 - 693760
Alignment:
| Q |
1 |
tcatcatcttcttcctcagattttgagttcacaatctccatttcacctcgcaaatcctccaacacactctgtcctgctgatgaactcttctacaaaggcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
693866 |
tcatcatcttcttcctcagattttgagttcacaatctccatttcacctcgcaaatcctccaacacactctgtcctgcagatgaactcttctacaaaggcc |
693767 |
T |
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| Q |
101 |
aactctt |
107 |
Q |
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||||||| |
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| T |
693766 |
aactctt |
693760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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