View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1176_high_9 (Length: 411)

Name: NF1176_high_9
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1176_high_9
NF1176_high_9
[»] chr7 (12 HSPs)
chr7 (34-208)||(27158698-27158872)
chr7 (219-307)||(27158909-27158997)
chr7 (42-205)||(27148513-27148663)
chr7 (329-401)||(27158989-27159060)
chr7 (223-268)||(29488396-29488441)
chr7 (223-268)||(33232737-33232782)
chr7 (223-268)||(34284879-34284924)
chr7 (266-310)||(27148649-27148693)
chr7 (211-265)||(20205815-20205869)
chr7 (65-150)||(27135413-27135498)
chr7 (223-268)||(19036442-19036487)
chr7 (223-268)||(20718149-20718194)
[»] chr2 (7 HSPs)
chr2 (219-265)||(29133506-29133552)
chr2 (223-268)||(3708369-3708414)
chr2 (223-268)||(11869002-11869047)
chr2 (219-264)||(16221368-16221413)
chr2 (223-268)||(35360395-35360440)
chr2 (219-267)||(3197101-3197149)
chr2 (210-262)||(34191321-34191373)
[»] chr8 (9 HSPs)
chr8 (223-268)||(20665703-20665748)
chr8 (219-257)||(40919381-40919419)
chr8 (231-268)||(8020300-8020337)
chr8 (223-268)||(19245353-19245398)
chr8 (223-268)||(19318537-19318582)
chr8 (223-268)||(30551066-30551111)
chr8 (223-268)||(44215815-44215860)
chr8 (219-255)||(26885660-26885696)
chr8 (218-266)||(33445562-33445610)
[»] chr6 (5 HSPs)
chr6 (223-268)||(247335-247380)
chr6 (223-268)||(33975919-33975964)
chr6 (229-267)||(11129642-11129680)
chr6 (223-268)||(12582569-12582614)
chr6 (215-255)||(29457184-29457224)
[»] chr5 (5 HSPs)
chr5 (215-264)||(37054287-37054336)
chr5 (223-268)||(37461787-37461832)
chr5 (229-268)||(13351446-13351485)
chr5 (219-264)||(5551303-5551348)
chr5 (209-265)||(27721687-27721743)
[»] chr4 (11 HSPs)
chr4 (223-268)||(10262109-10262154)
chr4 (223-268)||(19587829-19587874)
chr4 (223-268)||(21562301-21562346)
chr4 (223-268)||(24080180-24080225)
chr4 (223-268)||(43329822-43329867)
chr4 (218-264)||(24378372-24378418)
chr4 (230-268)||(51449888-51449926)
chr4 (211-252)||(36059034-36059075)
chr4 (209-265)||(22164281-22164337)
chr4 (219-255)||(28031815-28031851)
chr4 (212-252)||(30305984-30306024)
[»] chr3 (4 HSPs)
chr3 (223-268)||(916193-916238)
chr3 (219-252)||(41291730-41291763)
chr3 (223-268)||(44075496-44075541)
chr3 (219-255)||(7202938-7202974)
[»] chr1 (4 HSPs)
chr1 (218-264)||(5503786-5503832)
chr1 (209-255)||(45701331-45701377)
chr1 (219-265)||(47835800-47835846)
chr1 (219-264)||(44243867-44243912)
[»] scaffold0045 (2 HSPs)
scaffold0045 (212-264)||(63856-63908)
scaffold0045 (212-264)||(71188-71240)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 27158698 - 27158872
Alignment:
Q  34 tagtattaagcagcttgcagggtttgtgctagtaataaccaaaactgaataaaggagttggcttaaattctccgattgtaatctgaatccccactaggat 133  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27158698 tagtattgagcagcttgcagggtttgtggtagtaataaccaaaacttaataatggagttggcttaaattctccgattgtaatctgaatccccactaggat 27158797  T
Q  134 ctctttactatgtattttcgataataattaatataaagtttgaaatgttttggctcaaaattttcgtgattttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27158798 ctctttactatgtattttcgataataattaatataaagtttgaaatgttttagctcaaaattttcgtgattttat 27158872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 27158909 - 27158997
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggacaaaatttttatgatttaccgtgacacttagattcacaatcatc 307  Q
    |||| ||||||||||||| |||||||||||||||| |||| |||||||||||||  ||||||| ||||| |||| ||||||||||||||    
T  27158909 atatattattcattgttcttaccaactgagctaaatttataaggacaaaattttcgtgatttatcgtgatacttggattcacaatcatc 27158997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 27148513 - 27148663
Alignment:
Q  42 agcagcttgcagggtttgtgctagtaataaccaaaactgaataaaggagttggcttaaattctccgattgtaatctgaatccccactaggatctctttac 141  Q
    |||||||| |||||||||||   || |||| |||||| ||||||||||| |||||||||||||||||||         |||||||||||| ||||| | |    
T  27148513 agcagcttccagggtttgtg---gtgataagcaaaacagaataaaggagatggcttaaattctccgatt---------atccccactagggtctctatcc 27148600  T
Q  142 tatgtattttcgataataattaatataaagtttgaaatgttttggctcaaaattttcgtgattt 205  Q
    |||||| |||| ||||||||||| ||||| ||||||||||||  |||| |||| || |||||||    
T  27148601 tatgta-tttcaataataattaaaataaaatttgaaatgtttcagctcgaaatgtttgtgattt 27148663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 27158989 - 27159060
Alignment:
Q  329 acaatcatccctcgattctaactttgaattagttacatttttacaataattatcattggaatatgtacctatg 401  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| | |||||||||||||||    
T  27158989 acaatcatccctcaattctaactttgaattagttaca-ttttacggtaattatcactagaatatgtacctatg 27159060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 29488441 - 29488396
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  29488441 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 29488396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 33232737 - 33232782
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  33232737 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 33232782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 34284879 - 34284924
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  34284879 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 34284924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 27148649 - 27148693
Alignment:
Q  266 aaatttttatgatttaccgtgacacttagattcacaatcatctct 310  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||    
T  27148649 aaatgtttgtgatttaccgtgacacttggattcacaatcatctct 27148693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 20205869 - 20205815
Alignment:
Q  211 gactttatatattttattcattgttcctaccaactgagctaaacttatgaggaca 265  Q
    ||||||| |||| |||| |||||| | |||||||||||||||||||| |||||||    
T  20205869 gactttacatatattatgcattgtccataccaactgagctaaacttacgaggaca 20205815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 27135413 - 27135498
Alignment:
Q  65 gtaataaccaaaactgaataaaggagttggcttaaattctccgattgtaatctgaatccccacta-ggatctctttactatgtattt 150  Q
    |||||||||  ||| ||||||||||| || ||||| |||||||||||||| |  |||||| |||| |||||||||||| ||||||||    
T  27135413 gtaataaccgcaacagaataaaggagatgacttaatttctccgattgtaa-ccaaatcccaactagggatctctttaccatgtattt 27135498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 19036442 - 19036487
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| |||||||| |||||| ||||||||||||    
T  19036442 tttatgcattgttcctatcaactgagttaaactcatgaggacaaaa 19036487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 20718194 - 20718149
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| |||||||| |||||| ||||||||||||    
T  20718194 tttatgcattgttcctatcaactgagttaaactcatgaggacaaaa 20718149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 29133506 - 29133552
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggaca 265  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||    
T  29133506 atattttatgcattgttcataccaactgagctaaacttacgaggaca 29133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 3708414 - 3708369
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  3708414 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 3708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 11869002 - 11869047
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  11869002 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 11869047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 16221368 - 16221413
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||    
T  16221368 atattttatgcattgttcataccaactgagctaaactcatgaggac 16221413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 35360395 - 35360440
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  35360395 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 35360440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 3197101 - 3197149
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggacaaa 267  Q
    |||| |||| |||||| |||||||||||||||||||| | |||||||||    
T  3197101 atatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 34191321 - 34191373
Alignment:
Q  210 agactttatatattttattcattgttcctaccaactgagctaaacttatgagg 262  Q
    |||||||| |||| |||| |||||| ||||||||||||||||| || ||||||    
T  34191321 agactttacatatattatgcattgtccctaccaactgagctaagctcatgagg 34191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 20665703 - 20665748
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  20665703 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 20665748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 40919381 - 40919419
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaactta 257  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40919381 atatattatgcattgttcctaccaactgagctaaactta 40919419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 8020337 - 8020300
Alignment:
Q  231 ttgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  8020337 ttgttcctaccaactgagctaagcttacgaggacaaaa 8020300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 19245398 - 19245353
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| || |||||||||||| ||||||||||||    
T  19245398 tttatgcattgttcctatcatctgagctaaactcatgaggacaaaa 19245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 19318582 - 19318537
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| || |||||||||||| ||||||||||||    
T  19318582 tttatgcattgttcctatcatctgagctaaactcatgaggacaaaa 19318537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 30551066 - 30551111
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  30551066 tttatgcattgttccaatcaactgagctaaactcatgaggacaaaa 30551111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 44215815 - 44215860
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| | ||||||||||    
T  44215815 tttatgcattgttcctatcaactgagctaaactcacgaggacaaaa 44215860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 26885660 - 26885696
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaact 255  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  26885660 atattttatgcattgttcataccaactgagctaaact 26885696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 33445610 - 33445562
Alignment:
Q  218 tatattttattcattgttcctaccaactgagctaaacttatgaggacaa 266  Q
    ||||| |||| |||||||||||||||||||||||| || | ||||||||    
T  33445610 tatatattatgcattgttcctaccaactgagctaagctcacgaggacaa 33445562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 247380 - 247335
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  247380 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 247335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 33975964 - 33975919
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  33975964 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 33975919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 11129642 - 11129680
Alignment:
Q  229 cattgttcctaccaactgagctaaacttatgaggacaaa 267  Q
    |||||||||||||||||||||||| || |||||||||||    
T  11129642 cattgttcctaccaactgagctaagctcatgaggacaaa 11129680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 12582569 - 12582614
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||| ||||||| ||||||||||||    
T  12582569 tttatgcattgttcctatcaactgaactaaactcatgaggacaaaa 12582614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29457224 - 29457184
Alignment:
Q  215 ttatatattttattcattgttcctaccaactgagctaaact 255  Q
    |||||||| |||| |||| ||||||||||||||||||||||    
T  29457224 ttatatatattatgcatttttcctaccaactgagctaaact 29457184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 37054287 - 37054336
Alignment:
Q  215 ttatatattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||||    
T  37054287 ttatatatattatgcattgtccctaccaactgagctaaactcatgaggac 37054336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 37461832 - 37461787
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  37461832 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 37461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 13351485 - 13351446
Alignment:
Q  229 cattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  13351485 cattgttcctatcaactgagctaaactcatgaggacaaaa 13351446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 5551303 - 5551348
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    ||||||||| ||||||||| |||||||||||||| || ||||||||    
T  5551303 atattttatgcattgttccaaccaactgagctaagctcatgaggac 5551348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 27721687 - 27721743
Alignment:
Q  209 cagactttatatattttattcattgttcctaccaactgagctaaacttatgaggaca 265  Q
    ||||||||  |||| |||| |||||||||||||||||||||||| || | |||||||    
T  27721687 cagactttgcatatattatgcattgttcctaccaactgagctaagctcacgaggaca 27721743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 10262109 - 10262154
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  10262109 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 10262154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 19587874 - 19587829
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  19587874 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 19587829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 21562346 - 21562301
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  21562346 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 21562301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 24080180 - 24080225
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  24080180 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 24080225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 43329867 - 43329822
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  43329867 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 43329822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 24378372 - 24378418
Alignment:
Q  218 tatattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    ||||||||||||||| |||| ||||||||||||||||| | ||||||    
T  24378372 tatattttattcattattccaaccaactgagctaaactcacgaggac 24378418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 51449926 - 51449888
Alignment:
Q  230 attgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  51449926 attgttcctatcaactgagctaaactcatgaggacaaaa 51449888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 36059075 - 36059034
Alignment:
Q  211 gactttatatattttattcattgttcctaccaactgagctaa 252  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  36059075 gactttatgtattttatgcattgttcataccaactgagctaa 36059034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 22164281 - 22164337
Alignment:
Q  209 cagactttatatattttattcattgttcctaccaactgagctaaacttatgaggaca 265  Q
    ||||| ||| |||| |||| ||||||||||||||||| ||||||||| | |||||||    
T  22164281 cagaccttacatatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 28031851 - 28031815
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaact 255  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  28031851 atattttatgcattgttccaaccaactgagctaaact 28031815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 30306024 - 30305984
Alignment:
Q  212 actttatatattttattcattgttcctaccaactgagctaa 252  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  30306024 actttatatattttatgcattgttcataccaactgaactaa 30305984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 916238 - 916193
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  916238 tttatgcattgttcctatcaactgagctaaactcatgaggacaaaa 916193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 41291763 - 41291730
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaa 252  Q
    |||||||||||||||||| |||||||||||||||    
T  41291763 atattttattcattgttcttaccaactgagctaa 41291730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 44075496 - 44075541
Alignment:
Q  223 tttattcattgttcctaccaactgagctaaacttatgaggacaaaa 268  Q
    ||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  44075496 tttatgcattgttcctatcaactgagctaaagtcatgaggacaaaa 44075541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 7202938 - 7202974
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaact 255  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  7202938 atattttatgcattgttccaaccaactgagctaaact 7202974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 5503786 - 5503832
Alignment:
Q  218 tatattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    |||||||||| ||||||| |||||||||||||||| |||| ||||||    
T  5503786 tatattttatgcattgtttctaccaactgagctaagcttacgaggac 5503832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 45701377 - 45701331
Alignment:
Q  209 cagactttatatattttattcattgttcctaccaactgagctaaact 255  Q
    ||||| ||| ||||||||| |||||||| ||||||||||||||||||    
T  45701377 cagaccttacatattttatgcattgttcataccaactgagctaaact 45701331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 47835846 - 47835800
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggaca 265  Q
    ||||||||| ||||||||| ||||||||||||||| ||| |||||||    
T  47835846 atattttatgcattgttccaaccaactgagctaaatttacgaggaca 47835800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 44243912 - 44243867
Alignment:
Q  219 atattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    |||| |||| ||||||||||||||||||||||||||| | ||||||    
T  44243912 atatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 63908 - 63856
Alignment:
Q  212 actttatatattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    ||||| ||||| |||| |||||| |||||||||||||||||||| | ||||||    
T  63908 actttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 71240 - 71188
Alignment:
Q  212 actttatatattttattcattgttcctaccaactgagctaaacttatgaggac 264  Q
    ||||| ||||| |||| |||||| |||||||||||||||||||| | ||||||    
T  71240 actttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 71188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University