View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_low_10 (Length: 416)
Name: NF1176_low_10
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 103 - 379
Target Start/End: Original strand, 26710882 - 26711164
Alignment:
| Q |
103 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagaataaa-gagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26710882 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagtataaaagagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
26710981 |
T |
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| Q |
202 |
atataaagctatttccatgtcggcatctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacatt-----nnnnnnnnnnnnnn |
296 |
Q |
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| T |
26710982 |
atataaagctatttctatgtcggcacctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacattaaaaaaataaaaaataaaa |
26711081 |
T |
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| Q |
297 |
ntgagtttagccgaataatatcattcttgaaatgatacataatgatagttaatataattttagccgaataatattaaaaaact |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26711082 |
atgagtttagccgaataatatcattcttgaaatgatacataatggtagttaatataattttagccgaataatattaaaaaact |
26711164 |
T |
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