View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_low_16 (Length: 349)
Name: NF1176_low_16
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 26993095 - 26992811
Alignment:
| Q |
18 |
atgttatgggaagaagtgattattatgtgtgatagaaatctgagactatacataaaagaaagtgaacaagtactccaaaatttttgcaaaccaaatgcca |
117 |
Q |
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| T |
26993095 |
atgtaatgggaagaagtgattattatgcatgatagaaatctgagactatgcataaaagaaagtgaacaaatactccaaaatttttgcaaaccaaatgcca |
26992996 |
T |
|
| Q |
118 |
aggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaagctccaatactctttcgatctcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992995 |
aggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaagctccaatactctttcgatctcaag |
26992896 |
T |
|
| Q |
218 |
cgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgctattctctgct |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992895 |
cgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgctattctctgct |
26992811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 1755394 - 1755524
Alignment:
| Q |
171 |
ttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggta |
270 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |||||||| ||||| |
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| T |
1755394 |
ttggaatctcgctctccaccaagctccaatactctttcgatctcaagagattttccatcaacatagaccaatgatcatagt-gaccatcaaatcaaggta |
1755492 |
T |
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| Q |
271 |
tggtaggttggacgaaattgctattctctgct |
302 |
Q |
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| T |
1755493 |
tggcaggttggacgaaattgctattctctgct |
1755524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 12793938 - 12793831
Alignment:
| Q |
191 |
aagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattg |
290 |
Q |
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|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| || |||||| |
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| T |
12793938 |
aagctccagtactctttcgatctcaagagattttccatcaacatagaccaatgatcataat-gaccatcgaatctaggtatggcaggttgaacaaaattg |
12793840 |
T |
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| Q |
291 |
ctattctct |
299 |
Q |
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|||||||| |
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| T |
12793839 |
ttattctct |
12793831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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