View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1176_low_23 (Length: 289)

Name: NF1176_low_23
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1176_low_23
NF1176_low_23
[»] chr2 (5 HSPs)
chr2 (112-279)||(12798732-12798899)
chr2 (28-98)||(29108801-29108871)
chr2 (28-98)||(35470336-35470406)
chr2 (28-68)||(12798966-12799006)
chr2 (28-98)||(15658769-15658839)
[»] chr5 (6 HSPs)
chr5 (28-98)||(29144398-29144467)
chr5 (28-71)||(24181449-24181492)
chr5 (28-71)||(26296459-26296502)
chr5 (28-71)||(22732010-22732053)
chr5 (44-73)||(32310887-32310916)
chr5 (61-97)||(20175228-20175264)
[»] scaffold0007 (1 HSPs)
scaffold0007 (28-77)||(185522-185571)
[»] chr3 (3 HSPs)
chr3 (28-96)||(55142368-55142436)
chr3 (29-96)||(50662504-50662571)
chr3 (28-71)||(53653110-53653153)
[»] chr8 (6 HSPs)
chr8 (28-98)||(44362259-44362329)
chr8 (28-72)||(26491449-26491493)
chr8 (28-98)||(7662332-7662402)
chr8 (29-71)||(42563188-42563230)
chr8 (41-98)||(23722248-23722305)
chr8 (62-98)||(24261365-24261401)
[»] chr1 (3 HSPs)
chr1 (29-71)||(27919172-27919214)
chr1 (29-65)||(42887975-42888011)
chr1 (28-68)||(43638416-43638456)
[»] chr7 (4 HSPs)
chr7 (28-97)||(9047066-9047135)
chr7 (28-80)||(24495339-24495391)
chr7 (28-72)||(8919379-8919423)
chr7 (31-71)||(30898124-30898164)
[»] chr4 (7 HSPs)
chr4 (28-73)||(1955284-1955329)
chr4 (28-71)||(47089207-47089250)
chr4 (28-71)||(49081327-49081370)
chr4 (41-98)||(47742829-47742884)
chr4 (28-73)||(48743459-48743504)
chr4 (28-96)||(7633207-7633274)
chr4 (62-98)||(31314354-31314390)
[»] scaffold0735 (1 HSPs)
scaffold0735 (29-65)||(928-964)
[»] chr6 (2 HSPs)
chr6 (28-83)||(31955638-31955693)
chr6 (28-73)||(2656424-2656469)
[»] scaffold0603 (1 HSPs)
scaffold0603 (28-98)||(6930-7000)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 12798899 - 12798732
Alignment:
112 tggtttggcctcgtgtcacgagtcacgggtgtctttactcacttgacatgtgctgccaaaaccaaacatactttattgttcgttcacttcttccatgtaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12798899 tggtttggcctcgtgtcacgagtcacgggtgtctttactcacttgacatgtgctgccaaaaccaaacatactttattgttcgttcacttcttccatgtaa 12798800  T
212 gatgccaaatttgagaactttctagacattgctctcttaattaattaaaaaccactctcctagaatta 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12798799 gatgccaaatttgagaactttctagacattgctctcttaattaattaaaaaccactctcctagaatta 12798732  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 29108801 - 29108871
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||||||| |||||||||||||||||||||| |||||||||||| |||   ||||||||||||||||||    
29108801 caattttcaagaaaatatttccttttataattccttaaccagtgtcgcgggagcaccgattaacatttccc 29108871  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 35470336 - 35470406
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    ||||||||||  ||||||||||||| ||||||| |||||||||| | ||||| ||||| ||||||||||||    
35470336 caattttcaaggaaatatttcctttaataattccttaaccagtgccccggaggcaccggttaacatttccc 35470406  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 12799006 - 12798966
Alignment:
28 caattttcaataaaatatttccttttataattctttaacca 68  Q
    |||||||| |||| |||||||||||||||||||||||||||    
12799006 caattttcgataatatatttccttttataattctttaacca 12798966  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 15658839 - 15658769
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||| |||| ||||||||||||| ||||||| |||| ||||| | ||||  ||| ||||||||||||||    
15658839 caatttccaatgaaatatttcctttaataattccttaatcagtgccccggatgcactgattaacatttccc 15658769  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 29144398 - 29144467
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||| ||| |||||||||||||||||||||  ||||| |||||||||| ||||||||| ||||||||||    
29144398 caatttccaaaaaaatatttccttttataatttcttaactagtgtctcgg-gacaccgatcaacatttccc 29144467  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 24181492 - 24181449
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
24181492 caattttcaatacaatatttccttttataattccttaaccagtg 24181449  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 26296459 - 26296502
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
26296459 caatttccaatacaatatttccttttataattctttaaccagtg 26296502  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 22732010 - 22732053
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||    
22732010 caattttcaagaaaatatttccttttatgattctttaactagtg 22732053  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 32310887 - 32310916
Alignment:
44 atttccttttataattctttaaccagtgtc 73  Q
    ||||||||||||||||||||||||||||||    
32310887 atttccttttataattctttaaccagtgtc 32310916  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 20175264 - 20175228
Alignment:
61 tttaaccagtgtctcggagacaccgattaacatttcc 97  Q
    ||||||||||||||||||||||||| ||| |||||||    
20175264 tttaaccagtgtctcggagacaccggttagcatttcc 20175228  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 185522 - 185571
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcgg 77  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||    
185522 caattttcaatacaatattttcttttataattccttaaccagtgtctcgg 185571  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 55142368 - 55142436
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 96  Q
    |||||| ||| ||||||||| |||||||||||||||||||||| |  ||| ||||||| ||||||||||    
55142368 caatttccaaaaaaatattttcttttataattctttaaccagtattccggggacaccggttaacatttc 55142436  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 50662504 - 50662571
Alignment:
29 aattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 96  Q
    ||||| ||||| |||||||  ||||||||||| |||||||||| ||| ||||||||| ||||||||||    
50662504 aatttccaatataatattttattttataattccttaaccagtgcctccgagacaccggttaacatttc 50662571  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 53653153 - 53653110
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
53653153 caattttcaatataaaattttcttttataattctttaaccagtg 53653110  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 44362329 - 44362259
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||||||||| |||||||| ||||||||||| ||||||| || | ||||||||  | ||||||||||||    
44362329 caattttcaatacaatatttctttttataattccttaaccactgccccggagacattggttaacatttccc 44362259  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 26491493 - 26491449
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgt 72  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
26491493 caatttccaatacaatatttccttttataattctttaactagtgt 26491449  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 7662332 - 7662402
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||| ||| |||||||||||||| ||||||  |||||||||  ||| ||| ||||| ||||||||||||    
7662332 caatttccaaaaaaatatttcctttaataatttcttaaccagtacctcagaggcaccggttaacatttccc 7662402  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 42563230 - 42563188
Alignment:
29 aattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||    
42563230 aattttcaatacaatatttccttttataattccttaactagtg 42563188  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 23722305 - 23722248
Alignment:
41 aatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    ||||||||||||| |||||| |||||||||| | ||| | ||||| ||||||||||||    
23722305 aatatttccttttctaattccttaaccagtgccccgggggcaccggttaacatttccc 23722248  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 24261401 - 24261365
Alignment:
62 ttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||||||| ||| ||||||||||||||||||||||    
24261401 ttaaccagtgcctcagagacaccgattaacatttccc 24261365  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 27919172 - 27919214
Alignment:
29 aattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
27919172 aattttcaagaaaatatttccttttataattctttaacaagtg 27919214  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 42888011 - 42887975
Alignment:
29 aattttcaataaaatatttccttttataattctttaa 65  Q
    ||||||||| |||||||||||||||||||||||||||    
42888011 aattttcaagaaaatatttccttttataattctttaa 42887975  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 43638416 - 43638456
Alignment:
28 caattttcaataaaatatttccttttataattctttaacca 68  Q
    |||||||||| | |||||||||||||||||||| |||||||    
43638416 caattttcaagacaatatttccttttataattccttaacca 43638456  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 9047135 - 9047066
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttcc 97  Q
    |||||||||||| || |||||||||||| |||| |||||||||||| ||| ||||  | |||||||||||    
9047135 caattttcaatacaaaatttccttttatgattccttaaccagtgtcccggggacattggttaacatttcc 9047066  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 24495339 - 24495391
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggaga 80  Q
    |||||||||| | ||||||| |||||||||||||||||| |||| ||||||||    
24495339 caattttcaagataatattttcttttataattctttaacaagtgcctcggaga 24495391  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 8919423 - 8919379
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgt 72  Q
    |||||||||| |||  ||||||||||||||||| |||||||||||    
8919423 caattttcaaaaaatcatttccttttataattccttaaccagtgt 8919379  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 30898124 - 30898164
Alignment:
31 ttttcaataaaatatttccttttataattctttaaccagtg 71  Q
    ||||||| |||||||||||||||||||||| ||||| ||||    
30898124 ttttcaagaaaatatttccttttataattccttaacaagtg 30898164  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 1955329 - 1955284
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtc 73  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||    
1955329 caattttcaatacaatattttcttttataattctttaaccaatgtc 1955284  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 47089250 - 47089207
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||    
47089250 caattttcaagaaaacatttccttttataattccttaaccagtg 47089207  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 49081327 - 49081370
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtg 71  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||    
49081327 caattttcaaaaaaatatttccttttctaattctttaatcagtg 49081370  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 47742829 - 47742884
Alignment:
41 aatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||||||||||||||||| ||||||| |||| ||| || |||||||||||||||||    
47742829 aatatttccttttataattccttaaccaatgtc-cgg-gataccgattaacatttccc 47742884  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 48743504 - 48743459
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtc 73  Q
    |||||| ||||| |||||||||||||||||||  ||||||||||||    
48743504 caatttccaatacaatatttccttttataatttcttaaccagtgtc 48743459  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 7633207 - 7633274
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttc 96  Q
    |||||||||| |||  ||||||||||||||||| |||||||||  | ||||| ||||| ||||||||||    
7633207 caattttcaaaaaatcatttccttttataattccttaaccagtcccccggag-caccggttaacatttc 7633274  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 31314390 - 31314354
Alignment:
62 ttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    ||||||||| ||||| |||||||||||||||||||||    
31314390 ttaaccagtatctcgaagacaccgattaacatttccc 31314354  T

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Target: scaffold0735 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 964 - 928
Alignment:
29 aattttcaataaaatatttccttttataattctttaa 65  Q
    ||||||||| |||||||||||||||||||||||||||    
964 aattttcaagaaaatatttccttttataattctttaa 928  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 31955693 - 31955638
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacac 83  Q
    ||||||||||  ||||||||||||||||||||  |||||||||||| || ||||||    
31955693 caattttcaaataaatatttccttttataatttattaaccagtgtcccgcagacac 31955638  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 2656469 - 2656424
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtc 73  Q
    |||||| ||||| ||||||| |||||||||||| ||||||||||||    
2656469 caatttccaatataatattttcttttataattccttaaccagtgtc 2656424  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 7000 - 6930
Alignment:
28 caattttcaataaaatatttccttttataattctttaaccagtgtctcggagacaccgattaacatttccc 98  Q
    |||||||||| |||  ||||||||||| ||||| ||||| |||||| ||||  ||||| ||||||||||||    
7000 caattttcaagaaatcatttccttttacaattccttaactagtgtcccggaatcaccggttaacatttccc 6930  T

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