View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1176_low_26 (Length: 243)

Name: NF1176_low_26
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1176_low_26
NF1176_low_26
[»] chr5 (9 HSPs)
chr5 (114-201)||(37429085-37429172)
chr5 (114-193)||(37640225-37640304)
chr5 (148-193)||(37400540-37400585)
chr5 (148-193)||(37533487-37533532)
chr5 (148-193)||(37594711-37594756)
chr5 (148-193)||(37697174-37697219)
chr5 (148-193)||(37703055-37703100)
chr5 (148-193)||(37824282-37824327)
chr5 (148-193)||(37712011-37712056)
[»] chr4 (2 HSPs)
chr4 (148-193)||(24217468-24217513)
chr4 (148-193)||(16842604-16842649)
[»] chr3 (1 HSPs)
chr3 (148-193)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37429085 - 37429172
Alignment:
Q  114 cctgtgagttagttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttag 201  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429085 cctgtgagttggttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttag 37429172  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 37640225 - 37640304
Alignment:
Q  114 cctgtgagttagttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    |||||||| | ||| ||| |||| ||||||  | ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37640225 cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37640304  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 37400585 - 37400540
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37400585 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37400540  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37533487 - 37533532
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37533487 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37533532  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37594711 - 37594756
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37594711 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37594756  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37697174 - 37697219
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37697174 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37697219  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37703055 - 37703100
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37703055 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37703100  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37824282 - 37824327
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37824282 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37824327  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 37712011 - 37712056
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||    
T  37712011 acaatgaaggcaaagaataacaccactgtggaattgttccatttaa 37712056  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 24217513 - 24217468
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||    
T  24217513 acaacgaaggcaaggaataacaccattgcggaattgttccatttaa 24217468  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 16842649 - 16842604
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| | |||||||||||| |||||    
T  16842649 acaacgaaggcaaagaataacaccaatttggaattgttccatttaa 16842604  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 14553497 - 14553542
Alignment:
Q  148 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 193  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  14553497 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 14553542  T

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