View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_low_29 (Length: 230)
Name: NF1176_low_29
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 693723 - 693866
Alignment:
| Q |
1 |
acgtaccatggagatacgaggggggagatgaagagggaagagttggcctttgtagaagagttcatcagcaggacagagtgtgttggaggatttgcgaggt |
100 |
Q |
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| T |
693723 |
acgtaccatggagatacgaggggagagatgaagaggtaagagttggcctttgtagaagagttcatctgcaggacagagtgtgttggaggatttgcgaggt |
693822 |
T |
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| Q |
101 |
gaaatggagattgtgaactcaaaatctgaggaagaagatgatga |
144 |
Q |
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| T |
693823 |
gaaatggagattgtgaactcaaaatctgaggaagaagatgatga |
693866 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 29063051 - 29063002
Alignment:
| Q |
23 |
gggagatgaagagggaagagttggcctttgtagaagagttcatcagcagg |
72 |
Q |
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||||| |||||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
29063051 |
gggaggtgaagagggaggagttttcctttgtagaagagatcatcagcagg |
29063002 |
T |
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