View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_low_4 (Length: 629)
Name: NF1176_low_4
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 322 - 629
Target Start/End: Complemental strand, 34349235 - 34348928
Alignment:
| Q |
322 |
tgagtccataaacatggatatgaatttatgaaaattttatttctactttctttccctcttaggtgagaaaagaaaagatgggagacagaatcactgcact |
421 |
Q |
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| T |
34349235 |
tgagtccataaacatggatatgaatttataaaaattttatttctactttctttccctcttaggtgagaaaagaaaagatgggagacagaatcactgcact |
34349136 |
T |
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| Q |
422 |
ccaacaattagtgtctccttttggaaaggtatgtatttggattcaaaatataatgatatatacattgaacatttcctttgtgaatttaatttctatgata |
521 |
Q |
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| T |
34349135 |
ccaacaattagtgtctccttttggaaaggtatgtatttggattcaaaatataatgatatatacattgatcatttcctttgtgaatttaatttctatgata |
34349036 |
T |
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| Q |
522 |
atggagnnnnnnntaattatatgatagttttattatgatgttttgtttactaataaaagcttaaaaatttgttatatttgtcagactgatacagcctcag |
621 |
Q |
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| T |
34349035 |
atggagaaaaaaataattatatgatagttttattatgatgttttttttactgataaaagcttaaaaatttgttatatttgtcagactgatacagcctcag |
34348936 |
T |
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| Q |
622 |
tgctttct |
629 |
Q |
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| T |
34348935 |
tgctttct |
34348928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 78 - 287
Target Start/End: Complemental strand, 34349481 - 34349272
Alignment:
| Q |
78 |
atgaagtatttatttcacctggtgtttagagnnnnnnnaattgataaagtaacaatttttgtgcagaatatatctgaagtaagtgtggtgaagaaaagtg |
177 |
Q |
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| T |
34349481 |
atgaagtatttatttcacctggtgtttagagtttttttaattgataaagtaacaatttttgtgcagaatatatctgaagtaagtgtggtgaagaaaagtg |
34349382 |
T |
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| Q |
178 |
ggagtgagccagcacccaaaaggacccgtaacgaaaccccatcaactttgccagcttttaaggtacaataagtgcaactgaccttttaacaataagggaa |
277 |
Q |
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| T |
34349381 |
ggagtgagccagcacccaaaaggacccgtaacgaaaccccatcaactttgccagcttttaaggtacaataagtgcaactgaccttttaacaataagggaa |
34349282 |
T |
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| Q |
278 |
acctttaacc |
287 |
Q |
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| T |
34349281 |
acctttaacc |
34349272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 23874107 - 23874001
Alignment:
| Q |
163 |
tggtgaagaaaagtgggagtgagccagcacccaaaaggacccgtaacgaaaccccatcaactttgccagcttttaaggtacaataagtgcaactgacctt |
262 |
Q |
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||||||| ||||||||||||||||| ||||| |||||| || || |||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |
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| T |
23874107 |
tggtgaaaaaaagtgggagtgagcctgcaccaaaaaggtccaaaaatgaaaccccatcacctttgccagcttttaaggtacaataaatgcaactaacctt |
23874008 |
T |
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| Q |
263 |
ttaacaa |
269 |
Q |
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| T |
23874007 |
ttaacaa |
23874001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 23873876 - 23873803
Alignment:
| Q |
378 |
tcttaggtgagaaaagaaaagatgggagacagaatcactgcactccaacaattagtgtctccttttggaaaggt |
451 |
Q |
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| T |
23873876 |
tcttaggtgagaaaagagaagatgggggacagaatcactgcacttcaacaattggtttcaccttttggaaaggt |
23873803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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