View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1176_low_6 (Length: 526)

Name: NF1176_low_6
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1176_low_6
NF1176_low_6
[»] chr4 (55 HSPs)
chr4 (1-518)||(27571497-27572012)
chr4 (33-345)||(27411379-27411690)
chr4 (2-343)||(27418996-27419336)
chr4 (21-357)||(27414212-27414550)
chr4 (26-357)||(27567154-27567485)
chr4 (26-358)||(27421841-27422176)
chr4 (26-347)||(27424432-27424755)
chr4 (104-262)||(27556384-27556542)
chr4 (105-266)||(27478884-27479045)
chr4 (105-266)||(27485944-27486105)
chr4 (153-266)||(27506724-27506837)
chr4 (152-266)||(27412689-27412803)
chr4 (111-308)||(27513735-27513932)
chr4 (154-266)||(27444795-27444907)
chr4 (154-305)||(27431110-27431261)
chr4 (169-266)||(27563347-27563444)
chr4 (111-266)||(27486967-27487122)
chr4 (156-266)||(27585717-27585827)
chr4 (176-266)||(27595434-27595524)
chr4 (109-266)||(27559241-27559398)
chr4 (153-305)||(27425838-27425990)
chr4 (154-262)||(27557516-27557624)
chr4 (111-266)||(27526113-27526268)
chr4 (111-266)||(27479885-27480040)
chr4 (146-265)||(27501336-27501455)
chr4 (111-266)||(27505703-27505858)
chr4 (105-247)||(27527139-27527281)
chr4 (111-268)||(27498399-27498556)
chr4 (169-266)||(27503964-27504061)
chr4 (111-266)||(27476671-27476826)
chr4 (182-265)||(27554364-27554447)
chr4 (156-266)||(27415650-27415760)
chr4 (169-266)||(27468328-27468425)
chr4 (169-266)||(27475580-27475677)
chr4 (169-262)||(27524566-27524659)
chr4 (171-263)||(27490004-27490096)
chr4 (169-265)||(27514933-27515029)
chr4 (104-266)||(27446124-27446286)
chr4 (169-266)||(27420450-27420547)
chr4 (105-266)||(27497323-27497484)
chr4 (156-305)||(27565913-27566062)
chr4 (169-266)||(27570050-27570147)
chr4 (153-265)||(27502809-27502921)
chr4 (171-266)||(17970343-17970438)
chr4 (219-265)||(27507815-27507861)
chr4 (216-266)||(27600642-27600692)
chr4 (169-266)||(27423264-27423361)
chr4 (223-268)||(27473988-27474033)
chr4 (223-266)||(27460574-27460617)
chr4 (223-266)||(27466917-27466960)
chr4 (111-266)||(27469444-27469599)
chr4 (211-266)||(27495620-27495675)
chr4 (171-262)||(27508896-27508987)
chr4 (216-262)||(27577407-27577453)
chr4 (210-266)||(27502136-27502192)
[»] chr5 (3 HSPs)
chr5 (111-266)||(1756758-1756913)
chr5 (96-295)||(1755967-1756166)
chr5 (111-265)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (111-266)||(55084770-55084925)
chr3 (105-262)||(38032260-38032417)
chr3 (105-262)||(38035033-38035190)
chr3 (105-262)||(38038525-38038682)
chr3 (105-262)||(50913474-50913631)
chr3 (105-262)||(38027433-38027590)
chr3 (153-266)||(38043929-38044042)
chr3 (111-266)||(38024876-38025031)
chr3 (111-266)||(38031328-38031483)
chr3 (171-266)||(50910004-50910099)
chr3 (111-266)||(50911870-50912025)
chr3 (220-266)||(48840713-48840759)
chr3 (209-266)||(38028767-38028824)
chr3 (174-266)||(50904793-50904885)
chr3 (111-266)||(38036794-38036949)
chr3 (209-266)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (105-262)||(21608235-21608392)
chr8 (192-266)||(21634608-21634682)
chr8 (209-266)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (171-266)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 27571497 - 27572012
Alignment:
Q  1 ttttttgtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaaggg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||    
T  27571497 ttttttgtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaaggg 27571596  T
Q  101 acttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaa 200  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||    
T  27571597 acttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaa 27571696  T
Q  201 ttactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgct 300  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571697 ttactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgct 27571796  T
Q  301 tgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaaccannnnnnnnnnnctgttgaagannnnnnnat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||       ||    
T  27571797 tgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaacca-ttttttttttctgttgaaga-ttttttat 27571894  T
Q  401 tgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattattaatgacaccaaatattgttgaaacagt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571895 tgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattattaatgacaccaaatattgttgaaacagt 27571994  T
Q  501 tgcagcttttttcatctc 518  Q
    ||||||||||||||||||    
T  27571995 tgcagcttttttcatctc 27572012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 345
Target Start/End: Complemental strand, 27411690 - 27411379
Alignment:
Q  33 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 132  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  133 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 232  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  233 tgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagat 332  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||    
T  27411490 tgatcatcctatgggtggtctcacaattccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagat 27411392  T
Q  333 ttagatagattag 345  Q
    | |||||||||||    
T  27411391 taagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 2 - 343
Target Start/End: Complemental strand, 27419336 - 27418996
Alignment:
Q  2 tttttgtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaaggga 101  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  27419336 tttttgtgaggagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaaggga 27419237  T
Q  102 cttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaat 201  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  ||||||||||    
T  27419236 cttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaat 27419137  T
Q  202 tactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgctt 301  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||| || | || |||||||||||    
T  27419136 tactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 27419037  T
Q  302 gaattgagctctagatcatgctaatggagatttagatagatt 343  Q
     || |||  | || |||||||||||||||||| |||||||||    
T  27419036 -aagtgatttgtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 27414550 - 27414212
Alignment:
Q  21 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 120  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  121 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 220  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  221 agaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atc 318  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||| | || |||||||||| ||| || ||||||||| ||||||||||| |||  ||     
T  27414350 agaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatatt 27414251  T
Q  319 atgctaatggagatttagatagattagttgaagctaatt 357  Q
    ||||||| |||| |||||||||||||||||| |||||||    
T  27414250 atgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 26 - 357
Target Start/End: Original strand, 27567154 - 27567485
Alignment:
Q  26 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 125  Q
    |||||||||||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  27567154 aaaaacaatgggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctc 27567253  T
Q  126 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 225  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  226 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaa 325  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| ||    
T  27567354 ttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaa 27567453  T
Q  326 tggagatttagatagattagttgaagctaatt 357  Q
    |||||||||||||||| ||||||| |||||||    
T  27567454 tggagatttagatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 27422176 - 27421841
Alignment:
Q  26 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 125  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  126 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 225  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  226 tt----ggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatg 321  Q
    ||    ||||| |||||||| | |||||||||||||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || ||||||    
T  27421976 ttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatg 27421877  T
Q  322 ctaatggagatttagatagattagttgaagctaatta 358  Q
    |||||  ||| ||||||||||||||| | ||||||||    
T  27421876 ctaat-cagacttagatagattagttaaggctaatta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 26 - 347
Target Start/End: Complemental strand, 27424755 - 27424432
Alignment:
Q  26 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  126 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 225  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  226 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgct 323  Q
     ||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||    
T  27424555 atggatatgatcatccaatgggtggtcttaccattccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgct 27424456  T
Q  324 aatggagatttagatagattagtt 347  Q
    ||| |||||| | |||||||||||    
T  27424455 aatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 27556542 - 27556384
Alignment:
Q  104 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 203  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  204 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 27479045 - 27478884
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 27486105 - 27485944
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 27506724 - 27506837
Alignment:
Q  153 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 252  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  253 tcacaattccttgc 266  Q
    |||| |||||||||    
T  27506824 tcaccattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 27412689 - 27412803
Alignment:
Q  152 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggt 251  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| ||||||||     
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  252 ctcacaattccttgc 266  Q
    ||||| |||||||||    
T  27412789 ctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 308
Target Start/End: Complemental strand, 27513932 - 27513735
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 308  Q
    |||| |||||| ||| || |||||||||||| |||||||||||||| ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 27444907 - 27444795
Alignment:
Q  154 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 253  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  254 cacaattccttgc 266  Q
    |||||||||||||    
T  27444807 cacaattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 27431261 - 27431110
Alignment:
Q  154 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 253  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  ||||||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  254 cacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 305  Q
    ||||||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431161 cacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 27563444 - 27563347
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 27486967 - 27487122
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 27585717 - 27585827
Alignment:
Q  156 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 255  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  256 caattccttgc 266  Q
    | |||||||||    
T  27585817 ccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 27595434 - 27595524
Alignment:
Q  176 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||||| ||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgc 27595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 109 - 266
Target Start/End: Complemental strand, 27559398 - 27559241
Alignment:
Q  109 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 208  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  209 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
     ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 305
Target Start/End: Original strand, 27425838 - 27425990
Alignment:
Q  153 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 252  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||| |    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  253 tcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 305  Q
    |||| |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425938 tcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 27557516 - 27557624
Alignment:
Q  154 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 253  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| |||||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  254 cacaattcc 262  Q
    ||| |||||    
T  27557616 cactattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 27526268 - 27526113
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| || ||| |||||| |||||||||||| | |||||||||||| |||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 27479885 - 27480040
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| || ||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 27501336 - 27501455
Alignment:
Q  146 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 245  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  246 ggtggtctcacaattccttg 265  Q
    ||||||||||| ||||||||    
T  27501436 ggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 27505858 - 27505703
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| || ||| |||||| |||||| ||||| |||||||||||||| |||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatggg 247  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 27498399 - 27498556
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcgg 268  Q
    |||| || ||| |||| | |||||||||||| |||||||||||||| |||||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 27476671 - 27476826
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||   || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  182 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 265  Q
    ||||||||  ||||||||||| || |||||||| || ||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 27415650 - 27415760
Alignment:
Q  156 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 255  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||| ||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  256 caattccttgc 266  Q
    | |||||||||    
T  27415750 ccattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 27490004 - 27490096
Alignment:
Q  171 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcct 263  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 265  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 266
Target Start/End: Original strand, 27446124 - 27446286
Alignment:
Q  104 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 203  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  204 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
     |||  ||| |||||||||| |||| |||||||||||  |||| ||||||| | |||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgc 27446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 27497484 - 27497323
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    | | |||||| || ||||| ||||||||||||||||| |  ||||| ||||| |||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgc 27497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 27566062 - 27565913
Alignment:
Q  156 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 255  Q
    |||||||| ||  |||||||| ||||||||||||| |||||||| || || |  ||||  || |||||   ||||||||||||||| |||||||| ||||    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  256 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 305  Q
    | |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565962 ccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 27570147 - 27570050
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||| ||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 27502921 - 27502809
Alignment:
Q  153 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 252  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtc 27502822  T
Q  253 tcacaattccttg 265  Q
    | || ||||||||    
T  27502821 ttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 17970343 - 17970438
Alignment:
Q  171 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 27507861 - 27507815
Alignment:
Q  219 gaagaatttggatatgatcatcctatgggtggtctcacaattccttg 265  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 27600642 - 27600692
Alignment:
Q  216 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 27423264 - 27423361
Alignment:
Q  169 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  ||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 27473988 - 27474033
Alignment:
Q  223 aatttggatatgatcatcctatgggtggtctcacaattccttgcgg 268  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  223 aatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 27466917 - 27466960
Alignment:
Q  223 aatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 27469444 - 27469599
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| ||  ||||||| ||||| ||| ||| ||| |||||| |  | |  |    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcc 27469543  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| |||||| |||||| |||||| ||||| ||||||||||| || |||||||||    
T  27469544 aagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27495620 - 27495675
Alignment:
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||| |||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgc 27495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  171 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 27577407 - 27577453
Alignment:
Q  216 gaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattcc 27577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 27502192 - 27502136
Alignment:
Q  210 caagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||| || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27502192 caagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27502136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 1756913 - 1756758
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 1756166 - 1755967
Alignment:
Q  96 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 195  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  196 aagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttc 295  Q
    |||||||||||   |||||||||||  ||||  ||||||||||||| |  | ||||||||||||||| |||   ||||||||| || ||||  |||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatccaactgttggtctcacaattccatgcaaggaggatgaaatcttaaactttacttc 1755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 1754397 - 1754243
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 265  Q
    || | || ||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 55084770 - 55084925
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
      || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 38032260 - 38032417
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgc 38032359  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38032360 ttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttacaattcc 38032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 38035033 - 38035190
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||||||||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 38038525 - 38038682
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 38038682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 50913474 - 50913631
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 38027433 - 38027590
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || |||||||||||||| |    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgc 38027532  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||||||||| ||||||||    
T  38027533 ttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttacaattcc 38027590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 38043929 - 38044042
Alignment:
Q  153 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 252  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| ||||| || |    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  253 tcacaattccttgc 266  Q
    ||||||||||||||    
T  38044029 tcacaattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 38025031 - 38024876
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 38031483 - 38031328
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 50910004 - 50910099
Alignment:
Q  171 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 50910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 50912025 - 50911870
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||| |||||||||||||||||||| || |||||||| || ||||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 48840759 - 48840713
Alignment:
Q  220 aagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 38028824 - 38028767
Alignment:
Q  209 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 50904885 - 50904793
Alignment:
Q  174 tacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||||||| | | ||||||||| ||  | | || |||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgc 50904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 38036949 - 38036794
Alignment:
Q  111 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 210  Q
    ||||| |||||||| |||||||| ||||| ||   ||||| |||||||||  | ||  |  |||||||||||||| | | ||||||| | ||  | | ||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  211 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 38040139 - 38040082
Alignment:
Q  209 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 21608235 - 21608392
Alignment:
Q  105 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 204  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  205 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 262  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 21608392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 21634608 - 21634682
Alignment:
Q  192 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||  ||||| ||  ||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgc 21634682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 21607354 - 21607297
Alignment:
Q  209 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||  ||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgc 21607297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 3073613 - 3073708
Alignment:
Q  171 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 266  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University