View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1176_low_7 (Length: 521)
Name: NF1176_low_7
Description: NF1176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1176_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 30 - 512
Target Start/End: Original strand, 39477089 - 39477574
Alignment:
| Q |
30 |
actcttgtaatatgtaaggccttaaa---tgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatt |
126 |
Q |
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| T |
39477089 |
actcttgtaatatgtaaggccttaaaccatgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatt |
39477188 |
T |
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| Q |
127 |
taagtatattataaaaattgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtcggttcaatagtaaaagtttgaccttgtatttatg |
226 |
Q |
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| T |
39477189 |
taagtatattataaaaattgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtctgttcaatagtaaaagtttgaccttgtatttatg |
39477288 |
T |
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| Q |
227 |
taggaggcaagtttgtagttctgttttggattgctgtttgatttctggtttgagaatttttctgtattgtgttcctttggcttttctgttttatctgata |
326 |
Q |
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| T |
39477289 |
taggaggcaagtttgtagttctgttttggattgctgtttgatttctggtttgagaatttttctgtattgtattcctttggcttttttgttttatctgata |
39477388 |
T |
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| Q |
327 |
ctacacctttttagtaggattgattgagcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaa |
426 |
Q |
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| T |
39477389 |
ctacacctttttagtaggattgattgagcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaa |
39477488 |
T |
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| Q |
427 |
attgattctgcttcatttttgttgctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaaataagaataat |
512 |
Q |
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| T |
39477489 |
attgattctgcttcatttttgttgctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaaataagaataat |
39477574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 39484804 - 39485033
Alignment:
| Q |
35 |
tgtaatatgtaaggccttaa---atgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatttaagt |
131 |
Q |
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| T |
39484804 |
tgtaatttgtaatgccttaagccatgcccgattgaatttcatataagggtaattttaaagtgaaccaacttt-atctgtcactcaacaacacatttaagt |
39484902 |
T |
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| Q |
132 |
atattataaaaattgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtcggttcaatagtaaaagtttgaccttgtatttatgtagga |
231 |
Q |
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| T |
39484903 |
atattataaaaactgaaactatcatttttgtagttatgtttagtatattgttaat---gtcgattcaatagtaagaatttgacctggtatttatgtagga |
39484999 |
T |
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| Q |
232 |
ggcaagtttgtagttctgttttggattgctgttt |
265 |
Q |
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| T |
39485000 |
gacaagtttgtagttctgtttcggtttgctgttt |
39485033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 353 - 502
Target Start/End: Original strand, 39485057 - 39485206
Alignment:
| Q |
353 |
agcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaaattgattctgcttcatttttgttgct |
452 |
Q |
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| T |
39485057 |
agcatgttctgtactcaagttctgctggtctttatgaagttttttggatcattaagaaaagcagtactgacaaaattgattctgcttcttttttggtgct |
39485156 |
T |
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| Q |
453 |
gttacattttcattcttaaccaaattgattatacatacaaaaattaaaaa |
502 |
Q |
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| T |
39485157 |
gttacattttcattcttaaccaaattgagtatacacacaaaaattaaaaa |
39485206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 39456709 - 39456659
Alignment:
| Q |
451 |
ctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaa |
501 |
Q |
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| T |
39456709 |
ctgttacaattttattcttaaccaaattgagtttacatacaaaaatcaaaa |
39456659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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