View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11770_low_1 (Length: 504)
Name: NF11770_low_1
Description: NF11770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11770_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 225 - 490
Target Start/End: Original strand, 39267423 - 39267688
Alignment:
| Q |
225 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39267423 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
39267522 |
T |
|
| Q |
325 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatctttctcttcttcaaccatttctccctggtctggtctccattcatgg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39267523 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatgtttctcttcttcaaccatttctccctggtctggtctccattcatgg |
39267622 |
T |
|
| Q |
425 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctattctc |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39267623 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctaatctc |
39267688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 39267138 - 39267261
Alignment:
| Q |
19 |
acaatttgatgtctagttttgatattgaaacatcatttccctcccatgtttggttctattgttctttccactaccgaccctcttgaaaatggatttcact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
39267138 |
acaatttgatgtctagttttgatattgaaacatcatttccctcccatgtttggttctatcgttctttccaccactgaccctcttgaaaatggatttcact |
39267237 |
T |
|
| Q |
119 |
tgggtaagttagcttttttatgac |
142 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39267238 |
tgggtaagttagcttttttatgac |
39267261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 39267352 - 39267405
Alignment:
| Q |
176 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39267352 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
39267405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 39267727 - 39267768
Alignment:
| Q |
66 |
gtttggttctattgttctttccactaccgaccctcttgaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
39267727 |
gtttggttctattgttctttccaccactgaccctcttgaaaa |
39267768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University