View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11770_low_2 (Length: 243)
Name: NF11770_low_2
Description: NF11770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11770_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41256886 - 41257127
Alignment:
| Q |
1 |
ttagggtttcattttttgaggtgttaagattacgagctgttgtgtttgtagcatgttagaagttgttgtgatagaacacaatcctttatcgaatttgatt |
100 |
Q |
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| T |
41256886 |
ttagggtttcattttttgaggtgttaagactacgagctgttgtgtttgtagcatgttagaagttgttgtgacagaacacaatcctttatcgaatttgatt |
41256985 |
T |
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| Q |
101 |
tggtttgatttaaggtttcattttttgagctattaagattatgagctgtatcctgtaattgtgtttgtagcatgctactagtt-------gttgtgactt |
193 |
Q |
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| T |
41256986 |
tggtttgatttaaggtttcattttttgagctattaagattatgagctgtatcctgcaattgtgtttgtagcatgctactagttgttgtgagttgtgactt |
41257085 |
T |
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| Q |
194 |
gtgacacaacacaatccttaattgaatttgatttgatttgat |
235 |
Q |
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| T |
41257086 |
gtgacacaacacaatccttaattgaatttgatttgatttgat |
41257127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 41257084 - 41257193
Alignment:
| Q |
66 |
ttgtgatagaacacaatcctttatcgaatttgatttggtttgatttaaggtttcattttttgagctattaagattatgag-ctgtatcctgtaattgtgt |
164 |
Q |
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| T |
41257084 |
ttgtgacacaacacaatccttaattgaatttgatttgatttgatttaaggtttcattttttgagctgttaaaattaggagccggtattgtgcaattgtat |
41257183 |
T |
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| Q |
165 |
ttgtagcatg |
174 |
Q |
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| T |
41257184 |
ttgtagcatg |
41257193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 41256766 - 41256887
Alignment:
| Q |
98 |
atttggtttgatttaaggtttcattttttgagctattaagattatgagctg-tatcctgtaattgtgtttgtagcatgctactagttgttgtgacttgtg |
196 |
Q |
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| T |
41256766 |
atttgatttgatataaggtttcatttttt-agcttttcagattaggagctggtatcatgcagctgtgtttgtagcatgttagtagttg-------ttgtg |
41256857 |
T |
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| Q |
197 |
acacaacacaatccttaattgaatttgattt |
227 |
Q |
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| T |
41256858 |
acacaacacaatcc-taattgaatttgattt |
41256887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 41256828 - 41256872
Alignment:
| Q |
41 |
tgtgtttgtagcatgttagaagttgttgtgatagaacacaatcct |
85 |
Q |
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| T |
41256828 |
tgtgtttgtagcatgttagtagttgttgtgacacaacacaatcct |
41256872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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