View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_high_10 (Length: 345)
Name: NF11771_high_10
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 44547408 - 44547103
Alignment:
| Q |
1 |
caaaaacaaaatcgagcagaaaagtaccaatttggatcgcatgcactcgacgtttgataaaagttggacattctagatttcaatctcaatattttagggt |
100 |
Q |
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| T |
44547408 |
caaaaacaaaatcgaccagaaaagtaccaatttggatcgcatgcactcgacgtttgataaaagttggacattctagatttcaatctcaatattttagggt |
44547309 |
T |
|
| Q |
101 |
ttagattaaaacagtgaaaaataaacttatagcatcttgattcaacgcctgccaatgttccaactgcgtgcatatgacttgagtgcatacaaatccaacc |
200 |
Q |
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| T |
44547308 |
ttagattaaaacagtgaaaaataaacttatagcatcttgattcaacgcctgccaatgttccaactgcgtgcatatgacttgagtgcatacaaatccaacc |
44547209 |
T |
|
| Q |
201 |
aaataagtacaaaagcaaattgcctcgacag-cccccgacattcacacaatcggtgcatcgctaactgttagatgggatcaagatctgaaccatttggtc |
299 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44547208 |
aaataagtacaaaagcaaattgccttgacagccccccgaca-tcacacaatcagtgcatcgctaactgttagatgggatcaagatctgaaccatttggtc |
44547110 |
T |
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| Q |
300 |
tcgatcc |
306 |
Q |
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||||||| |
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| T |
44547109 |
tcgatcc |
44547103 |
T |
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