View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11771_high_14 (Length: 250)

Name: NF11771_high_14

Description: NF11771

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11771_high_14

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 123; E-Value: 3e-63

Query Start/End: Original strand, 35 - 197

Target Start/End: Complemental strand, 23384041 - 23383879

Alignment:

Q	35	aactaagtaaacaattgtaggcgttggatccggttactaagttgcaaaagagaaggaagtcaaacatgacctaatctctcttttaattgtttttacttcg	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23384041	aactaagtaaacaattgtaggccttggacccgattaccaagttgccaaagagaaggaagtcaaacatgacctaatctcccttttaattgtttttacttcg	23383942	T

Q	135	ttaaagtgaaccaatcattgttaagtgcaaccccccaattaaaacatccgaattataatcata	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23383941	ttaaagtgaaccaatcattgctaagtgcaaccgcacaattaaaacatctgaattataatcata	23383879	T

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Target: chr7; HSP #2

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 189 - 236

Target Start/End: Complemental strand, 23383498 - 23383451

Alignment:

Q	189	ataatcatattggttgagtagaaattttacaattcttatggtgacaaa	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	23383498	ataatcatattggctgagtagaaattttacaattcttatgatgacaaa	23383451	T

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