View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_high_19 (Length: 219)
Name: NF11771_high_19
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1752095 - 1751877
Alignment:
| Q |
1 |
ttaacctaaaatcttaaaacattcgtttcgtggatatctcaattataatgtatacaataatttccatctcaagtataagtccattaattcattaaacaat |
100 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1752095 |
ttaacctaaaattttaagacattcgtttcgtggatatctcaattataatgtatacaataatttccacctcaagtataagtccattaattcattaaacaat |
1751996 |
T |
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| Q |
101 |
ttttctttcatccacgtacatttgtacttgtaccgttgttgtgacaatcaacaaaacacaccttctaaattgacagaaagacttttgaaacaaagaggtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
1751995 |
ttttctttcatccacgtacatttgtacttgtaccgttgttgtgacaatcaacaaaacacaccttctaaattgacataaagactttcgaaacaaagaggtc |
1751896 |
T |
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| Q |
201 |
attcacatcgagtcaagaa |
219 |
Q |
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||||||||||| ||||||| |
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| T |
1751895 |
attcacatcgaatcaagaa |
1751877 |
T |
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