View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_high_20 (Length: 218)
Name: NF11771_high_20
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 39267783 - 39267979
Alignment:
| Q |
14 |
agagaagaaagtcaaacatgacctaatcgcttttaatctatttttacttcgttagtataaaccaaccattgccaagtgcaccacaatttatacaacctaa |
113 |
Q |
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| T |
39267783 |
agagaaggaagtcgaacatgacctaatcgcttttaatctatttttacttcgttagtataaaccaaccattgccaagtgcaccacaatttatacaacctaa |
39267882 |
T |
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| Q |
114 |
ttttagtcgtagtagttgagtaagaataccacaatcccagttgatac---------taaattttactactcgccaaaaaatttagtaaatttgctaa |
201 |
Q |
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| T |
39267883 |
ttttagtcgtagtagttgagtaagaattccacaatcccagttgatactaaattttataaattttactacttgccaaataatttagtaaatttgctaa |
39267979 |
T |
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