View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11771_low_1 (Length: 907)
Name: NF11771_low_1
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_low_1 |
 | |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 154063 - 154527
Alignment:
| Q |
18 |
ggttgcactgattgctgatcccatggccggtacatcaaaaaattaataatgctagcggcaatgggatctttctttcctcacatatatatacaaaagcact |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
154063 |
ggttgcactgagagctgatcccatggccggtacatcaaaaaattaataatgctagcggcaatgggatctttctttcctcacatatatatacaaaagcact |
154162 |
T |
|
| Q |
118 |
tgctagcaatatcaccacctgctctaaaacttgtatttattgataaatcatgaattaaattataattagttttcttttcctttttagcttcttaacccaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
154163 |
tgctagcaatatcaccacctactctaaaacttgtatttattgataaatcatgaattaaattataattagttttctttttctttttagcttcttaacccaa |
154262 |
T |
|
| Q |
218 |
cattaattctacatcgaattatatatagaagaagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
154263 |
cattaattctacatcgaattatatatagaagaagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaatagttttgtg |
154362 |
T |
|
| Q |
318 |
ggaagacaaacatgggagtatgatccagaagcaggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
154363 |
ggaagacaaacatgggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatg |
154462 |
T |
|
| Q |
418 |
ttaagacctgtggtgacctcctttggcgttttcaggtacgtataagggcagccgttagagcgctg |
482 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
154463 |
ttaagacctgtggtgatctcctttggcgttttcaggtacgtataagggcagccgttagagcgctg |
154527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 249 - 461
Target Start/End: Complemental strand, 10307867 - 10307655
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| || ||||||||||| || |||||||||| |
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|
| T |
10307867 |
aagatgtggaagctgaagatagcagaaggtgggaatgacccatacttattcagcacaaacaattctgtggggagccaaacatgggaataggatccagaag |
10307768 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
10307767 |
caggtagtgaagaagagagagctcaagttgaagaagttcgtaagaatttctataataaccgtttcaaggttaagacctgtggtgacctcctttcgcgttt |
10307668 |
T |
|
| Q |
449 |
tcaggtacgtata |
461 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
10307667 |
tcaggtacttata |
10307655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 249 - 456
Target Start/End: Original strand, 100415 - 100622
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
100415 |
aagatgtggaagctgaagattggagagggaaagaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
100514 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| | ||||| || ||| |||||||||||||||| |||||||| |
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|
| T |
100515 |
caggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggtgacctcctatggcgttt |
100614 |
T |
|
| Q |
449 |
tcaggtac |
456 |
Q |
| |
|
|||||||| |
|
|
| T |
100615 |
tcaggtac |
100622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 564 - 644
Target Start/End: Original strand, 154633 - 154712
Alignment:
| Q |
564 |
gagctccttatgaaatcaatcttttgtaataaaaaacatactaaacaagacattgaataattaaaagagcactacttatta |
644 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
154633 |
gagctccttatgaa-tcaatcttttgtaataaaaaacatactaaacaagacattgaataattaaaagagcactacttatta |
154712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 152; Significance: 5e-80; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 249 - 456
Target Start/End: Complemental strand, 102369 - 102162
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
102369 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagtatgatccagaag |
102270 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| || ||| |||| ||||| ||||| |||||||| |
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|
| T |
102269 |
caggtagtgaagaagagagggcccaagttgaagaagctcgtaagaatttctataacaaccgcttcaaagtcaagccctgcggtgatctcctctggcgttt |
102170 |
T |
|
| Q |
449 |
tcaggtac |
456 |
Q |
| |
|
|||||||| |
|
|
| T |
102169 |
tcaggtac |
102162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 249 - 456
Target Start/End: Original strand, 13041214 - 13041421
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||| ||||| |||||| ||||||||||||| || ||||| |||||||||| |||||||||||||||| ||| |
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|
| T |
13041214 |
aagatgtggaggttgaagatagcagatggtggtaatgacccatacatattcagcacaaacaactttgtaggaagacaaatatgggagtatgatccaaaag |
13041313 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||||| ||||||| ||||| |||||||| || || ||| ||| ||||||||||||||||||| |
|
|
| T |
13041314 |
caggtactttggaggagagagcacaagttgaagaagctcgtcagaatttttataacaaccgctttaaagtcaagctatgtagtgacctcctttggcgttt |
13041413 |
T |
|
| Q |
449 |
tcaggtac |
456 |
Q |
| |
|
|||||||| |
|
|
| T |
13041414 |
tcaggtac |
13041421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 249 - 455
Target Start/End: Complemental strand, 5701117 - 5700911
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||| |||||| ||||||| |||||||| ||| | || || || |||||||||| ||||||| | | |
|
|
| T |
5701117 |
aagatgtggaggctgaagatagcagatggggggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatg |
5701018 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
| |||| | || |||||||| ||||||||| |||| ||| | |||||||||| || || ||||| |||||| |||| ||||||| ||||||||||| |
|
|
| T |
5701017 |
ctggtacttctgaggagagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaagccctgcagtgaccttctttggcgttt |
5700918 |
T |
|
| Q |
449 |
tcaggta |
455 |
Q |
| |
|
||||||| |
|
|
| T |
5700917 |
tcaggta |
5700911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 249 - 455
Target Start/End: Complemental strand, 5681064 - 5680858
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| || |||||| ||||||| |||||||| |||||||| || || |||||||||| |||| | || | |
|
|
| T |
5681064 |
aagatgtggaggctgaagatagcagatggtgggaaggatccatacatattcagtacaaataactttgtggggaggcagacatgggagtttgatgctgatg |
5680965 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
| |||| | || |||||| | ||||||||| |||| ||| | |||||||| | || || ||||| |||||| |||| ||||||| |||||||| || |
|
|
| T |
5680964 |
ctggtactcctgaggagagatctcaagttgaaaaagcacgtcaacatttctatgacaatcgtttcaaagttaagccctgcagtgaccttctttggcgctt |
5680865 |
T |
|
| Q |
449 |
tcaggta |
455 |
Q |
| |
|
||||||| |
|
|
| T |
5680864 |
tcaggta |
5680858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 249 - 455
Target Start/End: Complemental strand, 5731706 - 5731500
Alignment:
| Q |
249 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaag |
348 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||| ||| || ||||||| |||||||| ||| | || || || |||||||||| ||||||| | | |
|
|
| T |
5731706 |
aagatgtggaggctgaagatagcagatggggggaatgatccacacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatg |
5731607 |
T |
|
| Q |
349 |
caggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgttt |
448 |
Q |
| |
|
| |||| | || |||||||| ||||||||| |||| ||| | |||||||||| || || ||||| ||||| |||| ||||||| |||||||| || |
|
|
| T |
5731606 |
ctggtacttctgaggagagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctt |
5731507 |
T |
|
| Q |
449 |
tcaggta |
455 |
Q |
| |
|
||||||| |
|
|
| T |
5731506 |
tcaggta |
5731500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 250 - 456
Target Start/End: Complemental strand, 12143217 - 12143011
Alignment:
| Q |
250 |
agatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaagc |
349 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||| || || ||| |||||| ||||||||| ||||| |||||||| |||||||| | ||| || || || |
|
|
| T |
12143217 |
agatgtggaggcttaagatagcagatggtgggaaggacccttacatattcaccacaaataactttgtaggaagacagacatgggaatttgaccctgatgc |
12143118 |
T |
|
| Q |
350 |
aggtagtgaagaagagagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgacctcctttggcgtttt |
449 |
Q |
| |
|
||||| | | ||||| ||||| ||||||||||||||| | |||||||||| ||||| || || |||||| | ||||| |||||||||||||| ||| |
|
|
| T |
12143117 |
aggtactcatgaagaacgagcaatggttgaagaagctcgtcacaatttctatatcaaccgatttaaggttaagccatgtggcgacctcctttggcgcttt |
12143018 |
T |
|
| Q |
450 |
caggtac |
456 |
Q |
| |
|
||||||| |
|
|
| T |
12143017 |
caggtac |
12143011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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