View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11771_low_11 (Length: 320)

Name: NF11771_low_11
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11771_low_11
NF11771_low_11
[»] chr1 (5 HSPs)
chr1 (8-191)||(13771310-13771492)
chr1 (195-238)||(10518265-10518308)
chr1 (195-238)||(20791963-20792006)
chr1 (195-229)||(22593647-22593681)
chr1 (201-238)||(7097735-7097772)
[»] scaffold0005 (1 HSPs)
scaffold0005 (140-190)||(230652-230702)
[»] chr4 (5 HSPs)
chr4 (140-190)||(14586672-14586722)
chr4 (140-190)||(6199548-6199598)
chr4 (195-237)||(13615215-13615257)
chr4 (140-190)||(34502578-34502628)
chr4 (195-229)||(47789510-47789544)
[»] chr5 (4 HSPs)
chr5 (140-190)||(1850918-1850968)
chr5 (195-239)||(6462392-6462436)
chr5 (195-239)||(4283135-4283179)
chr5 (195-239)||(13838869-13838913)
[»] chr3 (1 HSPs)
chr3 (195-238)||(38684763-38684806)
[»] chr7 (1 HSPs)
chr7 (196-238)||(29234695-29234737)
[»] chr2 (1 HSPs)
chr2 (201-239)||(27679114-27679152)
[»] chr8 (2 HSPs)
chr8 (200-229)||(28444783-28444812)
chr8 (135-191)||(6841992-6842048)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 13771492 - 13771310
Alignment:
Q  8 agagtggtgctatttaccacgaaacaggatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatattnnnnnnnnnnncat 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  13771492 agagtggtgctatttaccacgaaacaagatttcacgggattcacgaaccttcacaatttaactataataaacatccttttgatatt-aaaaaaaaaacat 13771394  T
Q  108 aaaagacattttttgcggaagaaacggcgagagtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacattt 191  Q
    ||||||||||||| || ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  13771393 aaaagacatttttggcagaaaaaacagcgagagtagtactatttttgtttttcgttgtgaaagtattcgtggtaaaaggcattt 13771310  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 10518265 - 10518308
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttata 238  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  10518265 tttttgataagctaatttaagtagcttatagcttaaagcttata 10518308  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 20792006 - 20791963
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttata 238  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  20792006 tttttgataagctaattcaagtagcttatagcttaaatcttata 20791963  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 22593681 - 22593647
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagctta 229  Q
    ||||||||||||||||| |||||||||||||||||    
T  22593681 ttttcgataagctaattcaagtagcttatagctta 22593647  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 7097772 - 7097735
Alignment:
Q  201 ataagctaatttaagtagcttatagcttaaagcttata 238  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  7097772 ataagctaattcaagtatcttatagcttaaagcttata 7097735  T

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Target: scaffold0005 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 230702 - 230652
Alignment:
Q  140 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  230702 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 230652  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 14586672 - 14586722
Alignment:
Q  140 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14586672 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaaggcatt 14586722  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 6199598 - 6199548
Alignment:
Q  140 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 190  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6199598 gtagtactattcttgtttttcgttgttaaagtattcgtggtaaaaggcatt 6199548  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 13615257 - 13615215
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13615257 ttttcgataagctaatttaagtagcttatagcttaaagcttat 13615215  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 34502628 - 34502578
Alignment:
Q  140 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 190  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  34502628 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 34502578  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 47789544 - 47789510
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagctta 229  Q
    ||||||||||||||||| |||||||||||||||||    
T  47789544 ttttcgataagctaattcaagtagcttatagctta 47789510  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 1850968 - 1850918
Alignment:
Q  140 gtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacatt 190  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1850968 gtagtactattcttgtttttcgttgtaaaagtattcgtggtaaaaggcatt 1850918  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 6462436 - 6462392
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 239  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  6462436 tttttgataagctaattcaagtagcttatatcttaaagcttatag 6462392  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 4283135 - 4283179
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 239  Q
    |||| |||||||||||| || |||||||||||||||| |||||||    
T  4283135 tttttgataagctaattcaaatagcttatagcttaaaccttatag 4283179  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 13838913 - 13838869
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttatag 239  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||    
T  13838913 tttttgattagctaattcaagtagcttatagcttaaaacttatag 13838869  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 38684806 - 38684763
Alignment:
Q  195 ttttcgataagctaatttaagtagcttatagcttaaagcttata 238  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  38684806 tttttgataagctaattcaagtagcttatagcttaaagcttata 38684763  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 29234695 - 29234737
Alignment:
Q  196 tttcgataagctaatttaagtagcttatagcttaaagcttata 238  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  29234695 tttcgataagctaattcaattagcttatagcttaaatcttata 29234737  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 27679114 - 27679152
Alignment:
Q  201 ataagctaatttaagtagcttatagcttaaagcttatag 239  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  27679114 ataagctaattcaagtagcttatggcttaaagcttatag 27679152  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 28444812 - 28444783
Alignment:
Q  200 gataagctaatttaagtagcttatagctta 229  Q
    ||||||||||||||||||||||||||||||    
T  28444812 gataagctaatttaagtagcttatagctta 28444783  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 6841992 - 6842048
Alignment:
Q  135 cgagagtagtactattcttgtttttcgttgtgaaagtattcgtggtaaaagacattt 191  Q
    |||| ||||| ||||||||||||||||||| | || | |||||||||||| ||||||    
T  6841992 cgagggtagtgctattcttgtttttcgttgcggaactgttcgtggtaaaaaacattt 6842048  T

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