View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11771_low_2 (Length: 634)

Name: NF11771_low_2
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11771_low_2
NF11771_low_2
[»] chr3 (8 HSPs)
chr3 (75-615)||(38044444-38044984)
chr3 (149-250)||(48837983-48838084)
chr3 (150-250)||(50152350-50152450)
chr3 (149-251)||(50903981-50904083)
chr3 (150-250)||(50916154-50916258)
chr3 (210-247)||(147941-147978)
chr3 (208-244)||(50823392-50823428)
chr3 (208-244)||(50852433-50852469)
[»] chr8 (5 HSPs)
chr8 (149-615)||(21634805-21635271)
chr8 (149-223)||(5515537-5515611)
chr8 (75-122)||(21634741-21634788)
chr8 (205-243)||(10583097-10583135)
chr8 (204-248)||(32735648-32735692)
[»] chr7 (9 HSPs)
chr7 (149-250)||(32089264-32089365)
chr7 (149-250)||(41812157-41812258)
chr7 (149-249)||(41706628-41706728)
chr7 (149-248)||(32096737-32096836)
chr7 (149-250)||(32093021-32093122)
chr7 (149-246)||(39128491-39128588)
chr7 (149-246)||(39478457-39478554)
chr7 (149-250)||(32087909-32088010)
chr7 (154-192)||(32089075-32089113)
[»] chr6 (5 HSPs)
chr6 (149-250)||(26217233-26217334)
chr6 (167-246)||(7618947-7619026)
chr6 (166-249)||(18871931-18872015)
chr6 (187-246)||(11187905-11187964)
chr6 (173-248)||(6845968-6846043)
[»] chr1 (7 HSPs)
chr1 (149-248)||(31141947-31142046)
chr1 (156-235)||(30272473-30272551)
chr1 (149-214)||(27402434-27402499)
chr1 (162-235)||(27981698-27981771)
chr1 (206-246)||(34470026-34470066)
chr1 (209-246)||(6760094-6760131)
chr1 (209-245)||(520521-520557)
[»] scaffold0856 (1 HSPs)
scaffold0856 (156-245)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (153-227)||(32271347-32271421)
chr2 (149-247)||(43741443-43741541)
chr2 (211-246)||(20940535-20940570)
[»] chr4 (5 HSPs)
chr4 (154-203)||(8762982-8763031)
chr4 (154-228)||(7777910-7777985)
chr4 (154-228)||(7772302-7772377)
chr4 (154-228)||(7792702-7792777)
chr4 (199-246)||(19260978-19261025)
[»] chr5 (4 HSPs)
chr5 (209-246)||(8058720-8058757)
chr5 (211-246)||(17013884-17013919)
chr5 (203-242)||(18352643-18352682)
chr5 (208-247)||(29176661-29176700)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 75 - 615
Target Start/End: Original strand, 38044444 - 38044984
Alignment:
Q  75 tgcagaagagaaatcatacctgaacggagaaaacttacgagtgtgaaattgaaggnnnnnnnnnnnnnnnnnnn--tttggaccatttctcgatttgtgc 172  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||    
T  38044444 tgcagaaaagaaatcatacctgaacggagaaaacttacgagtgtgaaattgaaggaaaaaaaaagtcaaaaaaaaatttggaccatttctcgatttgtgc 38044543  T
Q  173 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaagcttggatattcgcgtgtgtcata 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  38044544 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaagcttagatattcgcgtgtgttata 38044643  T
Q  273 taaacgcttaaaagctaaagatgtagccgatgtgggactaatagcaaacgtattatacaattacagttctcaaccagctttcacccaagtccaaagcaag 372  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  38044644 taaacgcttaaaagctaaagacgtagccgatgtgggactaatagcaaacgtaatatacaaatacagttctcaaccagctttcacccaagtccaaagcaag 38044743  T
Q  373 cgaccatgatgcatgcatctcccgctctctcactgaattgagttcagtttcagatttattaaataaaccaataaacaagttaagtgaacttcttcctctc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044744 cgaccatgatgcatgcatctcccgctctctcactgaattgagttcagtttcagatttattaaataaaccaataaacaagttaagtgaacttcttcctctc 38044843  T
Q  473 cctcacactcagaccaagaaacaagtacaatcgtacatatccatattccattctcataannnnnnnagataaaaagatctctgcatgcacaattgtaaag 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||| |||||||||||||||||    
T  38044844 cctcacactcagaccaagaaacaagtacaatcgtacatatccatattccattctcataa-ttttttagataaaaaggtctct-catgcacaattgtaaag 38044941  T
Q  573 actaattttctcgagttaattgagatttatttaagatattatt 615  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38044942 actaattttctcgagttaattgagatttatttaagatattatt 38044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 48838084 - 48837983
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48838084 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 48837985  T
Q  249 gc 250  Q
    ||    
T  48837984 gc 48837983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 50152450 - 50152350
Alignment:
Q  150 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  50152450 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcagatgtccccaaagggacaag 50152351  T
Q  250 c 250  Q
    |    
T  50152350 c 50152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 50904083 - 50903981
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50904083 tttgaaccatttctcgaattgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaattttatcggatgtccccgaagtgacaa 50903984  T
Q  249 gct 251  Q
    |||    
T  50903983 gct 50903981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 50916154 - 50916258
Alignment:
Q  150 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccat----gctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 245  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||    || |||||||||| |||||||||||||||||||||||| ||| ||||||    
T  50916154 ttggaccatttctcaatttgtgcgtgtcatccttgtgcaagggccatccatgccaatcttctctatatcgttccaattttatcggatgttcccaaaggga 50916253  T
Q  246 caagc 250  Q
    |||||    
T  50916254 caagc 50916258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 147978 - 147941
Alignment:
Q  210 gtatcgttccaattttatcggatgtccccgaagggaca 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  147978 gtatcgttccaattttatcggatgtccccgaagggaca 147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 50823428 - 50823392
Alignment:
Q  208 ctgtatcgttccaattttatcggatgtccccgaaggg 244  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50823428 ctgtatcgttccaattttatcggatgtccctgaaggg 50823392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 50852433 - 50852469
Alignment:
Q  208 ctgtatcgttccaattttatcggatgtccccgaaggg 244  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50852433 ctgtatcgttccaattttatcggatgtccctgaaggg 50852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 149 - 615
Target Start/End: Original strand, 21634805 - 21635271
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634805 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 21634904  T
Q  249 gcttggatattcgcgtgtgtcatataaacgcttaaaagctaaagatgtagccgatgtgggactaatagcaaacgtattatacaattacagttctcaacca 348  Q
    || | |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  21634905 gcctaggcattcgcgtgtgttatataaacgcttaaaagctaaagatgtagccgatgtgggactaatagcaaacgtaatatacaaatacagttctcaacca 21635004  T
Q  349 gctttcacccaagtccaaagcaagcgaccatgatgcatgcatctcccgctctctcactgaattgagttcagtttcagatttattaaataaaccaataaac 448  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21635005 gctttcacctaagtccaaagcaagcgaccatgatgcatgcatctcccgctctctcacttaattgagttcagtttcagatttattaaataaaccaataaac 21635104  T
Q  449 aagttaagtgaacttcttcctctccctcacactcagaccaagaaacaagtacaatcgtacatatccatattccattctcataannnnnnnagataaaaag 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  21635105 aagttaagtgaacttcttcctctccctcacactcagaccaagaaacaagtacaatcgtacatatccatattccattctcataatttttttagataaaaag 21635204  T
Q  549 atctctgcatgcacaattgtaaagactaattttctcgagttaattgagatttatttaagatattatt 615  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21635205 gtctctacatgcacaattgtaaagactaattttctcgagttaattgagatttatttaagatattatt 21635271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 5515611 - 5515537
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaatt 223  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  5515611 tttggaccatttctcgatttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaatt 5515537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 21634741 - 21634788
Alignment:
Q  75 tgcagaagagaaatcatacctgaacggagaaaacttacgagtgtgaaa 122  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  21634741 tgcagaaaagaaatcatacctgaaccgagaaaacttacgcgtgtgaaa 21634788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 10583097 - 10583135
Alignment:
Q  205 tctctgtatcgttccaattttatcggatgtccccgaagg 243  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  10583097 tctctgtatcgtttcaattttatcggatgtccccgaagg 10583135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 32735692 - 32735648
Alignment:
Q  204 ttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||    
T  32735692 ttctctgtatcgttccaattttatgggatgtcctcgaatggacaa 32735648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 32089264 - 32089365
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089264 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32089363  T
Q  249 gc 250  Q
    ||    
T  32089364 gc 32089365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 41812258 - 41812157
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812258 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 41812159  T
Q  249 gc 250  Q
    ||    
T  41812158 gc 41812157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 41706628 - 41706728
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706628 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 41706727  T
Q  249 g 249  Q
    |    
T  41706728 g 41706728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 32096737 - 32096836
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096737 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32096836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 32093021 - 32093122
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32093021 tttggaccatttctcgatttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32093120  T
Q  249 gc 250  Q
    ||    
T  32093121 gc 32093122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 39128491 - 39128588
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39128491 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 39128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 39478554 - 39478457
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478554 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 39478457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 32087909 - 32088010
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32087909 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaagggacaa 32088008  T
Q  249 gc 250  Q
    ||    
T  32088009 gc 32088010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 32089113 - 32089075
Alignment:
Q  154 accatttctcgatttgtgcgtgtcatccttgcgcagggg 192  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089113 accatttctcgatttgtgcgtgtcatccttgcgcagggg 32089075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 26217233 - 26217334
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217233 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 26217332  T
Q  249 gc 250  Q
    ||    
T  26217333 gc 26217334  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 7618947 - 7619026
Alignment:
Q  167 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    |||||||||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7618947 ttgtgcgtgtcatctttgcgcatggatcatgctaatcttctctgtatcattccaattttatcggatgtccccgaagggac 7619026  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 18871931 - 18872015
Alignment:
Q  166 tttgtgcgtgtcatccttgcgca-ggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 249  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| |||||| ||||||||| | ||||||||    
T  18871931 tttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtccccaatgggacaag 18872015  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 11187964 - 11187905
Alignment:
Q  187 caggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    |||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||    
T  11187964 caggggccatgctaatcttctctgtatcgttccaatttttccggacgtcctcgaagggac 11187905  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 6846043 - 6845968
Alignment:
Q  173 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    |||| ||||||||||||||| | || ||||||||| | ||||||||||||||||||||| ||| || |||| ||||    
T  6846043 gtgtgatccttgcgcaggggtcctgttaatcttctttatatcgttccaattttatcggaagtctccaaaggaacaa 6845968  T

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Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 31141947 - 31142046
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141947 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 31142046  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 30272551 - 30272473
Alignment:
Q  156 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 235  Q
    ||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  30272551 catttctcgatttgtgcgtgtcattgttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 30272473  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 27402434 - 27402499
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatc 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27402434 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgctaattttttctgtatc 27402499  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 27981771 - 27981698
Alignment:
Q  162 tcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 235  Q
    ||||||||||| ||||||||||||  ||||  |||||| ||||||||| ||| ||| |||||||||||||||||    
T  27981771 tcgatttgtgcatgtcatccttgcatagggctcatgctgatcttctctatattgtttcaattttatcggatgtc 27981698  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 34470066 - 34470026
Alignment:
Q  206 ctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34470066 ctctgtatcattccaattttatcggatgtccccgaagggac 34470026  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 6760131 - 6760094
Alignment:
Q  209 tgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6760131 tgtatcgttccaattttatcggatgtccctgaagggac 6760094  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 520521 - 520557
Alignment:
Q  209 tgtatcgttccaattttatcggatgtccccgaaggga 245  Q
    |||||||||||||||||||||||||| || |||||||    
T  520521 tgtatcgttccaattttatcggatgttccggaaggga 520557  T

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Target: scaffold0856 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 4895 - 4984
Alignment:
Q  156 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  4895 catttctcgatttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaattttatcgaatgtccccgaaggga 4984  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 32271347 - 32271421
Alignment:
Q  153 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  32271347 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaattttat 32271421  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 43741541 - 43741443
Alignment:
Q  149 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggaca 247  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||||||| ||||| |||  |||||||||||||||||| |||||||||    
T  43741541 tttggaccatttctcgattggtgcgtgtcatccttgtgcaggagccatgttaatcttctatgtattgttttaattttatcggatgtccctgaagggaca 43741443  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 20940570 - 20940535
Alignment:
Q  211 tatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20940570 tatcgtttcaattttatcggatgtccccgaagggac 20940535  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 8763031 - 8762982
Alignment:
Q  154 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763031 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 8762982  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7777910 - 7777985
Alignment:
Q  154 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 228  Q
    ||||||||||||||| ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7777910 accatttctcgatttatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7777985  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7772302 - 7772377
Alignment:
Q  154 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 228  Q
    |||||||| |||| | ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7772302 accatttcacgatgtatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7772377  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7792702 - 7792777
Alignment:
Q  154 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 228  Q
    ||||||||||||||| ||| || ||||||| ||  ||| |||||||||||||||||| ||||||||||||||||||    
T  7792702 accatttctcgatttatgcttgccatccttacgtcgggtgccatgctaatcttctctatatcgttccaattttatc 7792777  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 19261025 - 19260978
Alignment:
Q  199 taatcttctctgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||| |||||||||||||||||| ||||| | |||||||||||||    
T  19261025 taatcttttctgtatcgttccaatttaatcgggtttccccgaagggac 19260978  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 8058757 - 8058720
Alignment:
Q  209 tgtatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8058757 tgtatcgctccaattttatcggatgtccccgaagggac 8058720  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 17013919 - 17013884
Alignment:
Q  211 tatcgttccaattttatcggatgtccccgaagggac 246  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17013919 tatcgttccaattttatcggatgtccctgaagggac 17013884  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 18352682 - 18352643
Alignment:
Q  203 cttctctgtatcgttccaattttatcggatgtccccgaag 242  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  18352682 cttctctgtatcattccaattttatcggatgttcccgaag 18352643  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 29176661 - 29176700
Alignment:
Q  208 ctgtatcgttccaattttatcggatgtccccgaagggaca 247  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  29176661 ctgtatcgttccaattttatcggatgttctcgaagggaca 29176700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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