View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_low_21 (Length: 229)
Name: NF11771_low_21
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_low_21 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 36922050 - 36921828
Alignment:
| Q |
7 |
aatcccaggggtaattaggtttgatggtgccttaatagcattaggttcaagtttaaccctaatcacacttaacccaacatccttaataaaaggaaaatct |
106 |
Q |
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| T |
36922050 |
aatcccaggggtaattaggtttgatggtgccttaatagcattaggttcaagtttaaccctaatcacacttaacccaacatccttaataaaaggaaaatct |
36921951 |
T |
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| Q |
107 |
ttctccgttaagcttgtgactaaccccacattttgagccttaatttctggtgttttagcatcaatgtcataaacaaagtctttagttaggtccaattttg |
206 |
Q |
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| T |
36921950 |
ttctccgttaaggttgtgactaaccccacattttgagccttaatttctggtgttttagcatcaatgtcataaacaaagtctttagttaggtccaattttg |
36921851 |
T |
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| Q |
207 |
gcttaggcataggttgacctttt |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
36921850 |
gcttaggcataggttgacctttt |
36921828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 36929512 - 36929290
Alignment:
| Q |
7 |
aatcccaggggtaattaggtttgatggtgccttaatagcattaggttcaagtttaaccctaatcacacttaacccaacatccttaataaaaggaaaatct |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36929512 |
aatcccaggggtaattaggtttgaaggtgccttaatagcattaggttcaagtttaaccctaatcacacttaacccaacatccttaataaaaggaaaatct |
36929413 |
T |
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| Q |
107 |
ttctccgttaagcttgtgactaaccccacattttgagccttaatttctggtgttttagcatcaatgtcataaacaaagtctttagttaggtccaattttg |
206 |
Q |
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| T |
36929412 |
ttctccgttaagcttgtgactaatcccacatttttttccttaatttctggggctttagcatcaatgtcataaacaaggtctttagttaggtccatttgtg |
36929313 |
T |
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| Q |
207 |
gcttaggcataggttgacctttt |
229 |
Q |
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| T |
36929312 |
gcttaggcataggttggcctttt |
36929290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 36934071 - 36934158
Alignment:
| Q |
29 |
gatggtgccttaatagcattaggttcaagtttaaccctaatcacacttaacccaacatccttaataaaaggaaaatctttctccgtta |
116 |
Q |
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|||||||||||||||| ||| | ||||||||| || | ||||||||||||||||||||| ||||||| |||| ||| |||||||| |
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| T |
36934071 |
gatggtgccttaatagtatttgattcaagtttcactttgatcacacttaacccaacatccccaataaaatgaaattctgactccgtta |
36934158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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